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https://ena-docs.readthedocs.io/en/latest/submit/reads/webin-cli.html has an example for submitting a pair of FASTQ files:
```
STUDY TODO
SAMPLE TODO
NAME TODO
INSTRUMENT Illumina Genome Analyz…
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hi Developer,
I am bioinformatic from illumina in China.
So many dragen-customers(E.g:The First Affiliated Hospital of Zhengzhou University, China Yixueke Xueyuan Hemopathy Hospital) try to use …
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Hi,
This issue isn't really an issue per se, but more a question about the status of `lofreq3`.
I use `lofreq` version: 2.1.5 in an analysis pipeline for SARS-CoV-2. I like updating to the lat…
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Hello, my name is Andrea and I am a bioinformatician who is currently working with SARS-CoV-2 sequences in order to identify quasispecies within given samples. I have been trying to use CliqueSNV so a…
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This is to capture issues for building the next primate assembly hub.
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### Description of the bug
Hello.
I am trying to use viralrecon as to detect variants with a minimun frequency of 0.1. Nevertheless, when using viralrecon with the instructions given below, I have …
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hi,
my data is cfDNA data from target panel sequencing with high coverage .
so Pisces is Ok for my data to call somatic mutation with tumor only sample ??
thank you in advance !
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read_json almost never work for me. Here is for instance a json that is totally valid but breaks read_json
```
{
"id" : "GSM1698568",
"gse" : [
"GSE69360"
],
"title" : "Biochain_Adu…
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hi,The default genomic version seems to be hg19, is there any other way to analyze it using hg38?
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We recently discovered a [bug](https://github.com/czbiohub/sc2-illumina-pipeline/issues/80) in our code that by default we were leaving out most of the INDELs in vcf.
I see idseq is not enforcing t…