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Hello I have been trying to run MoSEA/mosea.py scan on the test files and I get this error.
python MoSEA/mosea.py scan --pfm --pfm_path MoSEA/test_files/motifs/pfms/ --fasta fafile_reg --out_dir fmo…
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Hi again
Apologies if this has been asked before, but I couldn't find an answer that would satisfy my curiosity...
I just would like to make sure I get the output of the sourmash gather mapping.
…
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Dear Sourmash team,
I want to create sketches for all GTDB genomes and I am using the following command according to tutorial (I want one sketch per fasta file):
time sourmash sketch dna -p k…
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The Nature paper says that by using the software graph_peak_caller, we can do ChiP-Seq analysis on genome graphs. However, the original graph_peaker_caller paper says "Graph Peak Caller was developed …
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Hi, I used metaWRAP v=1.2.1. I , but quant bin failed when making the the heatmap, and abundance table didn't contain three samples (I have three samples).
Here is my user error:
```
metawrap q…
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Dear Kamil, @KamilSJaron
Thanks for the development and maintenance of this tool! Since I have the problem with RAM then I tried **sploidyplot** followed by the instructions from your slides and it …
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I am trying to use Seqan3 to align two sequences consisting of arbitrary 64-bit integers. That is, the alphabet consists of all possible 2^64 64-bit integers. I was able to do this without problems in…
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I am assembling a plant genome (~250M) with hifiasm. First, I extract the ccs reads using : ./bam2fasta D01.ccs.bam -o D01.ccs.fasta ( Is it right for extract hifi reads ?)
The total CCS reads (D01…
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Dear developer:
We found the website(https://locityper.vercel.app/test_dataset) reference genome unsuitable for the test analysis.
I think this is caused by the wrong chromosome number, which is v…
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Hi,
I have run quant_bins but it has stopped with the following error:
```
`Starting in: /home/projects/env_10000/people/alpal/WaterWorks/F17FTSEUET0039_BACggoR/Clean/Alex_1/IDBA_all_TM_meta/all_…