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Currently our Tutorial is written in LaTeX to produce HTML and PDF output.
The code examples using the double-quote are fine in both HTML and PDF.
The code examples using the single-quote work f…
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## example 1: both minor
In the example below, the γ's don't sum up to 1.0 and `isMajor` is not set accordingly:
```julia
using PhyloNetworks
net21 = readTopology("(A,((B,#H1),(C,(D)#H1:::0.2)))…
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```
[kb219@compute-a-16-71 ~]$ prophyle download viruses
[prophyle] 2017-11-13 23:31:08 Downloading "viruses" started
[prophyle] 2017-11-13 23:31:08 Checking library 'viruses' in '/home/kb219/proph…
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Hi,
I'm currently using orthofinder on 200 very-closely related genomes (strains of the same yeast species). I've repeatedly observed an error which occurs at the tree building step. Any advice in …
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Dear Hyphy Team,
I've encountered a difficulty in passing a tree instance to a function as an argument. When I try to do as stated, I receive a segmentation fault.
To reproduce the issue, please…
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The _classify_wf_ and _identify_ commands allow genome files to be specified through a batch file and each genome given a specified identifier. Since these identifiers will ultimately end up in the N…
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Hi All,
Im trying to annotate my tree which was produced with IQ-TREE. I want my tree to only display bootstraps greater than 80%. through the following:
ggtree(tree) + geom_text2(aes(label=label, …
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We should definitely change the MLNs:
1. divide graphic output and algorithmic analyses
2. use a different method for ASR
3. use different handling of ASR (but which?)
4. allow for externally calculat…
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In the log of my galaxy instance (dev) I see messages like:
`Datatype class not found for extension 'motur.sabund', which is used in the 'format' attribute of parameter 'otu'`
which are apparent…
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Hi neuhasi
I'm working with you javascript library but with your last changes I'm lost with the tree feature. Take a histogram with four samples : A, B, C and D with values of 2, 10 ,20 and 15 and th…