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A topic that has come up in several task teams is the need to use inheritance concepts to model class hierarchies in our data models. This has come up specifically in the G2P and annotation task teams…
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```
HP Onset hierarchy should have equivalence classes using HsapDv
See:
https://code.google.com/p/developmental-stage-ontologies/wiki/HsapDv
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Original issue reported on code.google.com by `cmung…
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I’ve had a look at “Pectus excavatum” (HP:0000767) in the F1000-uberpheno and vertebrate.owl-version, since the inferences were the same. However, I was surprised that the logical definitions loo…
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Here are some more annotation camp topics from WormBase:
1) Phenotype Penetrance and Process Terms
Most of our Biological Process annotations come from
analysis of
mutant phenotypes. For pleiotropi…
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```
In Uberpheno@charite I see that "Abnormality of ion homeostasis" (HP:0003111)
is inferred to be a subclass_of "abnormal blood homeostasis" MP:0009642.
Neither MPO or HPO do assert this in their …
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See attached DIFF file.
Methods:
1. downloaded build 182 of obo-pipeline uberpheno
http://compbio.charite.de/hudson/job/hpo.ontology.uberpheno/182/
2. Removed redundant links:
{{{
owltools cros…
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Add travis test to check if we stay in unicode-space.
drseb updated
8 years ago
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I’m wondering is it possible to change the order in which the primary annotation types are displayed? When I put the appropriate details into canto.yaml I get them displayed like this:
![image](https…
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Reported by Louise C Daugherty [at sourceforge](https://sourceforge.net/p/obo/human-phenotype-requests/492/):
> I wonder if you are planning on revisiting and revising the hierarchy of the Clinical M…
drseb updated
8 years ago
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## Ontologies
- sequence(SO)
- relation(RO), ? but not sure which one because the being used with default chado already been deprecated and not sure how to use the new one.
- pub_type ?, have to doubl…