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Hey, great extension thanks
I am tied to using https://coder.com/docs/code-server which runs in the browser and quite nice. The drawback is that it uses Open VSX instead of marketplace for its exte…
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All of the leaf terms shown below are labeled with 'do not annotate' (though 3 of them do have a 1-4 annotations).
Should they be obsoleted, or is the 'do not annotate' label an error?
```
|__O-g…
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Hi Joel and community,
I ran EnrichM on my MAGs and it worked fine for nucleotide fasta files (.fa). I'd like to run protein through the pipeline so I annotated the MAGs using Prokka and I tried ru…
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Try to find proteins (that are not enzymes) in organism pathways, starting from Uniprot ID, and using KEGG KO database.
pkrog updated
4 years ago
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dealing with Mass Spec data
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Currently, after the [biotype cleanup](https://github.com/hammerlab/pyensembl/pull/165), only the biotype "protein_coding" is used in the check in [`Transcript.is_protein_coding()`](https://github.com…
joaoe updated
7 years ago
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Dear nextstrain team,
First, thank you for your work!
We recently updatated our nextclade sars-cov-2 classic dataset (from 2024-06-13T23:42:47Z to 2024-07-17T12:57:03Z).
however, our last seque…
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Hi there, firstly thank you for making such a wonderful program! It is a pleasure to use.
I have a quick question about the command line function. Can I set the minimum number of peptides required fo…
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Hi there,
I'm trying to run omark on a few annotations with `omark -f ${species}.omamer -d /.../LUCA-v2.0.0.h5 -o output -i ${species}.splice`. I ran omamer before with `omamer search --db /.../LUC…
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Hi,
I would like to generate versions of existing proteins with your tool that are lacking one amino acid in their sequence (using alphabet of 19 amino acids). Do you think it is possible when gene…