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Hi Metabuli team,
First of all, I would like to thank you for such an excellent tool, I really enjoy using it. I’m currently using Metabuli to classify my viral metagenome sequences, and I have bee…
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Hi,
I have recently installed the get contacts to compute the intermolecular interaction in my system. I have a protein system with 100 chain and I tried to run the get contacts and got the output. …
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Hi Vadim,
Hope this message finds you well.
I am currently searching in DIA-NN using two proteomes- mouse and human, making the search space rather large. Do you have any advice on how to make the…
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Hi Yang Lab,
Sorry for committing an issue on your repository - this is my first time communicating on GitHub and I still don't know the customs here. Anyhow, hi! I'm Yun, an undergraduate from Ols…
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Mark,
We have received your message and will make every effort to respond to you within a reasonable amount of time.
First Name: Mark
Last Name: Larance
Email: mark.larance@sydney.edu.au
Subject: s…
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Hello,
From the README, it is not clear how to supply a protein or a list thereof for training/inference. Could you clarify:
- how to supply inputs (proteins for --site, protein pairs for --search)
…
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I have a dataset of one hundred thousand protein pairs, which includes both real and predicted data.
I would like to score the protein pairs using L3N. How can I implement multithreading?
I have u…
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So, I have an example **protein A** that is very similar to my **protein B** I aim to study. The **protein A** has a binder **A-binder**, and I use **A-binder** as a scaffold to design my binder **B-b…
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Reem from Georgetown University has N-glycosylation data for Sulf1 (ID: Q8IWU6) and Sulf2 (Id: Q8IWU5) proteins from paper N-glycosylation occupancy of Sulf2 in an over-expression system (PMID: 370524…
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#### Current behavior:
22 genes are discovered to be uncorrelated with their corresponding reactions in `Leukotriene metabolism`.
| Gene| UniProtID| Reaction| GPR| Correlation| Manually …