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Hi,
Is there a way to request NCBI or Uniprot accessions and/or the functions of the target proteins using foldseek api ?
with the python command : result = get('https://search.foldseek.com/api…
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Dear Author,
I could reproduce task including MYTAG,PTC,NCl1,PROTEINS,IMDB-B,IMDB-M,RDT-M5K using the parameters of your paper, however, I could not reproduce the results for RDT-B and COLLAB usin…
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Thanks for providing the updated scripts for keras 2.0. It's really a great help if the **script for the feature extraction** of proteins has also been provided. Show that user can make their own mod…
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I am performing DIA-NN from FASTA digest library for Arabidopsis thaliana. I got FASTA file from [**_plants.ensembl_**](https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-58/fasta/arabidopsis_tha…
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We list the proteins present in a structure, but not the ncRNAs. For example, this structure has U2 snRNA. I presume these have RNACentral IDs , so we might be able to get these IDs too from a mappi…
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Hi!
We'd like to request new terms for these proteins:
integrase, DDE transposase, recombination directionality factor, relaxase, serine recombinase, T4SS ATPase, type IV coupling protein, tyrosi…
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Hello,
I was wondering if there is a way to change the FDR used by XTandem. I'd like to get numbers for peptides/proteins @ FDR
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Please add another value to the Taxonomic Classification database dropdown - "RefSeq protozoan genomes"
thanks
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It seems that some proteins give us an OOM (out of memory) when performing an alignment. One example of this is the protein `1JSX`
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Dear Vdemichev,
I am using Waters Synapt G2 to do IMS proteomics experiment.
I have converted the raw files using proteowizard and I combined the ion mobility scans.
I started by generating the s…