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- Passing gofasta variants -a with genbank files with features on the reverse strand results in errors such as:
Error: strconv.Atoi: parsing "complement(3956": invalid syntax
- gofasta snps,…
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I've only gotten to skim your work, but I am very excited looking forward to reading it in detail tomorrow....that life stuff gets in the way.
I put together an analysis to try to get Texas ASAP. Mi…
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**Description**
**Sub-lineage of:** KP.3
**Earliest sequence:** 2024-3-9, Tasmania — EPI_ISL_19140364
**Most recent sequence:** 2024-6-16, Canada, Alberta — EPI_ISL_19222338
**Continents circulati…
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`ivar variants` outputs results only in custom `.tsv` format so unusable with other tools.
Allow option to export variants in [VCF v4.3](https://samtools.github.io/hts-specs/VCFv4.3.pdf) format.
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KR.1 got its DeFLiRT sublineage likely in Philippines
Defining mutations: KR.1 >> C6568T > C6388T, S:S31del (del21653-55)
(New) Query: C6568T,C6388T,T3565C,C897A (by @aviczhl2 )
Samples: 3
Countr…
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Hey there, I am running the containerised version of clair3 with 32GB of mem. Its running on a small viral genome so shouldnt be too taxing. The seg fault happens and then the merged vcf is just the p…
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Usher's placement: JN.1.1.6> G22599C(S:R346T)> C9142T> A17344G(Orf1b:I1293V), C23601A(S:S680Y)
JN.1.1.5 subbranch?
Query: A17344G, C23601A
Earliest sequence: 02-15 Songkhla, Thailand EPI_ISL_1902…
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I'm running `java -jar synthea-with-dependencies.jar -c synthea.properties -p 100 Minnesota` and I'm getting 77% of patients with a `Suspected COVID-19` and 75% of patients with a `COVID-19` condition…
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Currently we are looking for case counts data and other statistical information from different countries as well as for people who can maintain this data (add, curate, update).
The entire process s…
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