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### Code
(hand-reduced)
```Rust
#![feature(coerce_unsized)]
pub enum Foo {
Bar([T; usize::MAX]),
}
use std::ops::CoerceUnsized;
impl CoerceUnsized for T {}
fn main() {}
`…
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Hi, I'm attempting to run FIREVAT on Mutect2 (GATK4) output, and running into the problem that all variants are removed after initialization. This is the end of the output I'm receiving:
```
...
…
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### Description
Based on a slack discussion with @Sebobo and @daniellienert I want to start a broader discussion here.
I'll provide an aspect that might improve the asset usage query.
The asp…
gjwnc updated
3 years ago
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It is relatively difficult to figure out which modules to import.
I wonder if we can define something like this
```
# gpc_defaults.py
import genophenocorr
from genophenocorr.analysis import co…
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The division of the recording API from the exporter API prevents many types of data analysis. Ideally, the exporter should be allowed to "subscribe" to events pushed at the record API (e.g. observe t…
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Feature request - Markduplicate
Hi, everybody. In the past, we developed a pipeline GATK to identify somatic variants from Illumina amplicon-based gene panel. Now we are changing our pipeline to a …
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### Describe the desired feature
Let ``src.cfg`` be
```
#define DMSG TXT
{DEBUG_MSG {TXT}}
#enddef
#define HELLO_WORLD
{DMSG "Hello"}
{DMSG "World"}
#enddef
#undef DMSG
{HELLO_WOR…
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- Whatshap - 1.7, Python - 3.10.8
- Conda
- Which command-line parameters you used
- whatshap haplotag -o haplotaggedchr22.bam --reference Homo_sapiens_assembly38.fasta --region chr22 phased.vcf.…
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Hi,
I am using lumpy-express for structural variant calling on populations of few 100 WGR sequenced samples.
This seems to require more than 100GB memory for lumpy. Because of this I can't u…
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1. Report the number of:
- (i) SNPs = 52
- (ii) indels = 10