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Hi @LuckyMD, I'm trying out embedding_density() using the latest scanpy version.
First of all, this is a wonderful feature - thank you!
Second, I was wondering if it would be possible to extend…
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**Describe the bug**
Hi, scenicplus team,
When I did all the upstream analysis and finally wanted to explore the interesting Perturbation simulation, error "X has 2 features, but NearestNeighbors is…
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```
This block will act like tinydbweb such that the app can draw values in google
docs or spreadsheet so that users can synn their app to the google doc platform
```
Original issue reported on code…
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Hi,
Thanks for making this very useful package!
Our lab recently purchased a 10x controller and we would like to use demuxlet to lower the cost. I am trying to have a test run of demuxlet on s…
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This came up in a side discussions [here](https://github.com/airr-community/airr-standards/issues/246#issuecomment-587962477) and [here](https://github.com/airr-community/airr-standards/issues/320#iss…
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Hi all,
First of all, thanks for developing useful tool for bioinformatician!
I want to embed the velocity into my spatial image using your tool, SIRV.
But, there is a problem when saving Seu…
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I've been using cellbender to clean a 10x single nuclei dataset to then perform downstream analysis on Seurat. The resulting filtered matrix h5 file from cellbender contains all the probes from the pr…
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Hello,
I have a question about how the VDJs are assigned to the contigs.
I have a trust4_cdr3.out, and I can see for example for malignant cells in my data, there are multiple VDJs. How is this po…
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Looks like a great library, but missing TypeScript typings.
Would be great to have them, and they can be easily maintained in a `.d.ts` file.
ryall updated
2 years ago
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Have you used bcr_dist with non 10X data? I see you can load a "BD" file, I am not familiar with this format...
Hoping to be able to map the emerging AIRR Clone format (https://github.com/airr-comm…