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I am trying your vingette with a Seurat object which is scRNA + scATAC combined. But I get the following error message when I run PairCells(). My scMEGA part of my code is below:
coembed.sub
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Interface definition between WP6 and WP3:
**Requirements of WP6 for WP3**
1. A path to the BINDDetect output folders of TOBIAS (First possibility for the TFBS)
2. Naming for the different cell c…
oKoch updated
2 years ago
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Hi Colin
I have reviewed some of the data and I stick with the statement that SMAD6 and SMAD7 are not dbTFs. A summary of why I have made this decision is below. There is just one paper to support …
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Dear Guangchuang.
I've been running some side-by-side comparisons of GSEA-P and gseGO from clusterProfiler, using the same ranked-by-logFC list of genes.
I am linking to two corresponding analysis f…
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**Usecase 1:**
1. Finding transcription factor binding sites with tf_comb
2. Market basket analyses for finding transcription factor binding sites
Files should be delivered by **WP1** and **WP2**…
oKoch updated
2 years ago
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https://mp.weixin.qq.com/s/boDawuFSHqY_LuXLyPOYsg
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/js2264/HiContactsData
Confirm the following by ed…
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Hello! I am trying to integrate two sc datasets and am having issues with the integration. The datasets obtained are both pre-processed. Here is my code:
```
# making chromatin assay to ATAC seu…
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It looks like `Test::Output:ver:auth` archive doesn't match it's META6.json, the [META6](https://github.com/Raku/REA/blob/main/meta/T/Test::Output/Test::Output:ver%3C1.001002%3E:auth%3Cgithub:raku-com…
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https://www.pombase.org/gene/SPAC110.02
binds hrk1 part of protein localization to chromatin
should be hidden because it is redundant (less specific than):
binds hrk1 part of protein localiza…