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python eval_single_anndata.py
FileNotFoundError: [Errno 2] No such file or directory: '/dfs/project/cross-species/yanay/data/proteome/embeddings/Homo_sapiens.GRCh38.gene_symbol_to_embedding_ESM2.pt…
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Open deprez 1000 map or pretty much any one with long column labels.
Save as PDF.
Open PDF and look at column labels on detail map page.
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Hi all, thank you for maintaining this wonderful package. I'm interested in creating a single figure with both a clustermap and a boxplot like this:
Here, the yaxis of the heatmap subplot and y…
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Hi Nick,
Is there a way to visualize the output from clusterTCR as a dendogram?
Thanks,
Michelle
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The training data of my project is all 4K (3840x2160, landscape), so I use rectangular training during training, as shown below:
![train_batch0](https://user-images.githubusercontent.com/35683311/2…
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When I build and deploy the jupyter book manually by
```
$ PYTHONPATH=./ jupyter-book build docs/
$ ghp-import -n -p -f docs/_build/html
```
then API documentation is rendered without any problem…
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# Motivation
EHR data has a lot of missing values. Currently we are calculating them using https://ehrapy.readthedocs.io/en/development/usage/preprocessing/ehrapy.preprocessing.qc_metrics.html#ehra…
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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Hello! Thank you for this great package!
I have an issue while running the dendrogram, not sure why the cells are not aligned with the tree line, could I ask how to troubleshoot this?...
Thank you…
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Hi,
here is a dataframe subset containing a cluster `"204"` which has clusters `"48"` and `"74"` as children, returned from `hierarchical_topics(docs)` method:
As shown, the distance between…