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Hello,
I'm trying to call variants using nanopolish.
I created a fasta from fastq and indexed it with nanopolish:
`zcat fastq_files/filtered.fastq.gz | paste - - - - | cut -f 1,2 | sed 's/^@/>/' | …
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When I was testing the installment and running with the test dataset,
FEELnc_codpot.pl -i candidate_lncRNA.gtf -a annotation_chr38.gtf -b transcript_biotype=protein_coding -g genome_chr38.fa --mode=s…
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Hwllo!
I've got an error using funannotate, while running it in "funannotate predict" mode. Previously, running in the test data, all've been worked OK, all external dependencies, python/perl packag…
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my command is:
`$VEP/vep --fork 8 --refseq --use_given_ref --force_overwrite --coding_only -i $IN/$BASE.vcf -o $OUT/$BASE/$BASE.csv --cache --offline --refseq --format id --assembly GRCh37 --tab --ch…
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Perl 6 was initially conceived to be the next version of Perl. It took way too long to mature to an initial release. Meanwhile, people interested in taking Perl 5 along, took back the reigns and c…
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Dear Haploclique creators,
I am able to install without any problem this conda https://anaconda.org/bioconda/haploclique.
When i tested haploclique -h, I get the manual without any problem.
…
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to foster community involvement - some richer sample code beyond MNIST should be tackled.
Generative Adversarial Networks is a hot topic amongst ML - and some sample code using swift should help enco…
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Determine if [Applitools](https://applitools.com/) is something we can use to do visual regression testing. While Cypress can also do this (in future), currently Applitools can do this now on site le…
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@chapmanb has [reported](https://github.com/bcbio/bcbio_validations/tree/master/somatic-lowfreq#low-frequency-umi-tagged-tumor-only-samples) poor sensitivity for somatic mutations below 1% variant all…
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### System information
- **Have I written custom code (as opposed to using a stock example script provided in TensorFlow)**: Yes, but only slightly--I'm using the Inceptio…