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This is copied from [here](https://github.com/cBioPortal/cbioportal/pull/7842#issuecomment-695131582). Given the multiple recent developments (FACETS, OncoKB, custom-JSON) around enhancement to varian…
jjgao updated
3 years ago
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Hello everyone,
I re-run the analysis https://spateo-release.readthedocs.io/en/latest/tutorials/notebooks/3_cci/2_microenvironment_modeling_analysis.html#, but I got an error when running the foll…
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Traceback (most recent call last):
File "/home/dr/anaconda2/bin/prepare_transcripts", line 10, in
sys.exit(main())
File "/home/dr/anaconda2/lib/python2.7/site-packages/RiboCode/prepare_tra…
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The Bio-atomspace dataset has humans vs SARS-CoV-2 genes/proteins interaction and we need to give the user an option to include/not this relationships.
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##### Project link
https://github.com/orgs/geneontology/projects/TBD
##### Project description
Currently, the only information that can be carried by the GPI format is whether or not an identif…
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Hi Tony and Alex (also Maria and Sandra?)
I have had a chat with Rachael and Pascale about tracking of reviewed annotations.
The GOC is spending considerable time at the moment trying to get the…
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As it turn out. The gene.gtf file provided in out snuc study is exon based instead of gene based. This create a lot of records with duplicates gene IDs but different start-end position and may leads t…
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# OGS remapping and manual annotations
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate ol…
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I'm looking at annotations in the proteins and humangenes domain in the `google_patent_research.annotations` table. It appears that the annotations themselves are normalized to their preferred name, b…
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STATUS: ROUGH DRAFT
Prior work:
https://github.com/kharchenkolab/CxG_metaschema - defines a meta-schema for CxG standard AnnData files. This is a critical use case to support, but we want this sc…