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https://mp.weixin.qq.com/s/gesTGoR5MaR3pImzrntJJA
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## Background:
For OT we will need each data release to included processed GTEx v8 data in `gene-expression-rsem-tpm-collapsed.rds` and `gene-counts-rsem-expected_count-collapsed.rds`.
In the la…
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(base) user@user:~/dhwani/MutSig2CV$ bin/MutSig2CV /home/user/dhwani/funcotator/passed/combined_passed.maf /home/user/dhwani/funcotator/passed/out_results ./reference/params_file.txt
Warning: lates…
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* **GO term ID and label for which you request a new superclass**
Msp1 GO:1990627 mitochondrial inner membrane fusion
Fzo1 GO:1990626 mitochondrial outer membrane fusion
should be part…
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#### What data file(s) does this issue pertain to?
PedCBio v10 dataload
#### What release are you using?
v10
#### Put your question or report your issue here.
v10 load related issues:
…
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https://pubmed.ncbi.nlm.nih.gov/34493867/
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist …
jjgao updated
2 years ago
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A new recommendation on the formatting of fusions was released which has formalised use of the `::` for notating/separating fusion genes. In the long term we should move this notation to the parser, i…
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Is this possible?
Everything is in here:
`/hot/project/algorithm/moPepGen/CCLE/processed/noncanonical-database/call-nonCanonicalPeptide/GRCh38-EBI-GENCODE34/pipeline-meta-call-NonCanonicalPeptid…
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#### What section of the manuscript should be updated?
methods - specifically `QUANTIFICATION AND STATISTICAL ANALYSIS`
#### Proposed changes
Currently, we do not have anything in this se…
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Opening an issue to plan the integration.
Inviting comment from @leicray @John-F-Wagstaff @ifokkema.
Note. I will be starting this process next week (22nd/23rd March) and will use this issue to…