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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** Twist v7
**Protocol:** KAPA L…
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Hi,
We are using cactus-hal2maf command but facing an error (PermissionError: [Errno 13] Permission denied: 'halStats'). Cactus version is the latest (released on 4/4/2024). Also, I was facing a Dock…
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_Note:_ This idea originated from the bottom of https://github.com/CAST-genomics/haptools/issues/73#issuecomment-1521143097
Once PGEN files can store multiallelic dosages, we should consider crea…
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Thank you for TRUST4 I installed it this week and ran it with some sample 10X genomics files to get a feel for what it does.
Why does the cdr3.out file have so many more lines than the report.txv fil…
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@ewels Can ftp links be updated to http/https in sra-explorer? Since browsers no longer allow FTP by default it would be beneficial to get http links instead.
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### Need
- As a user, I have noticed confusing parts in the documentation that need urgent improvements for a better experience. I suggest clarifications to enhance usability.
- As a Balsamic dev…
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We want to always add the number of reads to negative controls in the in NovaSeq X v1 workflow. We do not need to address the NovaSeq v3 workflow as we do not handle negative controls in this workflow…
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It is currently not trivial to estimate the resources needed to run the pipeline (particularly amount of disk space). This is especially important when processing large (10TB+) datasets as cost become…
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Since the last rushed demo update, the frontend seems to have become slower than previous versions.
jdreo updated
2 months ago