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**Snakemake version**
6.6.1 and 6.7.0
**Describe the bug**
When attempting to execute workflows with rules that use a snakemake wrapper, the jobs themselves (running on the cluster nodes)…
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Hi, I wanted to report an issue when running `nanodisco difference`, which appears related to #18. We have a large compute node on a SLURM cluster with 72 cores and 2TB memory. When allocating 24 cor…
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I created an SSH key and added it to my G-Node GIN user settings, but for some reason I can't push to it from the UPenn HPC.
Steps to reproduce:
```bash
dataset_id="ds002156"
base_dir="/cbica/…
tsalo updated
4 months ago
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Hi there,
I run CELLEX and now am running CELLECT on Hippocampus dataset of http://dropviz.org.
Genes are originally mouse gene names, I mapped them to human Ensembl IDs using Ensembl Biomart.
…
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I am playing with running the private worker on our HPC cluster. It spins up with:
```
-------------- celery@gpu001 v4.4.7 (cliffs)
--- ***** -----
-- ******* ---- Linux-3.10.0-693.2.2.el7.x86…
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executor > local (5)
[d8/6fd53d] process > QC (1) [100%] 1 of 1 ✔
[80/44cf34] process > fastqc (1) [100%] 1 of 1 ✔
[0c/7b75e3] process > kmer_freqs (1) [1…
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Hi
while trying to install in a HPC cluster using a regular user account without root permissions I got this error:
```
Building VariantVisualization → `~/.julia/packages/VariantVisualizatio…
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**Describe the issue**: I am using dask_jobqueue on a Slurm cluster. I noticed that frequently, a cluster that I scaled up to 50 jobs would only actually scale to 45 or so. If I called `wait_for_w…
zmbc updated
7 months ago
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When trying to use dsosql I have a cluster configuration file which directs the query to search across several nodes. If one of these nodes is down, the query will fail with something like:
Attach…
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Hi,
Thanks a lot for the great tutorial first of all! I learned a lot about how Relion works by going through it. I was just wondering if you have any general guidelines for picking input parameters …