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Which tools can create PoolNormal.bam, samtools merge?
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Hi, I am wondering if there's any pre-trained model to start with. And I also would like to know if there's any open dataset in h5ad format so that I can run directly with your code.
Thank you in a…
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Hi,
I am new to mass spec analysis and would like to use MS2PIP to improve protein predictions. My main goal is to identify small proteins in a mass spec dataset.
Currently, what I have done is…
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I got the following error message:
File "run_experiments.py", line 548, in
os.makedirs(FLAGS.log_dir)
File "/home/pharma1/venv_silico/lib/python3.5/os.py", line 241, in makedirs
mkdir…
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Hi! I want to merge overlapping reads in a bam file to get in silico long reads and was happy when I found bedtools merge. However, I only get the start and end position of the merged read, not an act…
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Hello,
First, thanks for this tool, it's really quick and useful.
I'm working on a diagnostic call on fusions. I'm been asked to be the more sensitive even if I get false positive. In this aim, I…
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1. For some Orbitraps it's possible to measure fragments in the ion trap or the Orbitrap. It would be nice to add this information (probably next to the `comment [instrument]`). It may be a bit redund…
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Documentation
## Documentation
Aspect | Detail
------------ | -------------
Summary | Documentation missing
Expert | @Helveg
Short summary of the use case is missing in the [Guidebook](h…
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Representing experimental data extracted from published literature is a very common use case, but not straightforward to fit into ISA model.
The samples, the protocols, the assays will be different a…