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calico
/
solo
software to detect doublets
MIT License
82
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13
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ImportError: cannot import name 'LightningLoggerBase' from 'pytorch_lightning.loggers'
#88
zznx
opened
2 weeks ago
0
Relax dependencies
#87
JoshLoecker
closed
1 month ago
0
Dependencies are too strict
#86
JoshLoecker
opened
1 month ago
1
Bump tqdm from 4.66.2 to 4.66.3
#85
dependabot[bot]
opened
4 months ago
0
addressed conda lightning conflict
#84
anyakors
closed
5 months ago
0
Dependency conflict: lightning 2.1.4 and scvi-tools 1.1.2
#83
jpintar
opened
5 months ago
1
set up consistent python3.12 env
#82
anyakors
closed
6 months ago
2
AttributeError: 'numpy.ndarray' object has no attribute 'loc' when running solo on the test dataset
#81
dstyaaaaaa
opened
7 months ago
1
hashsolo requires dense array
#80
zktuong
opened
8 months ago
0
Issues with hashsolo
#79
st4302
closed
1 year ago
0
Error using h5ad file
#78
jddavies95
closed
11 months ago
2
Hashsolo failing when only two HTOs are present?
#77
apredeus
closed
11 months ago
5
Solo in line?
#76
cnk113
closed
1 year ago
3
Problem with solo - PyTorch Lightning
#75
mari-ga
closed
1 year ago
4
Problem with hashsolo
#74
Kani0n
opened
2 years ago
10
Newbie questions: warning message, model parameters, and outputs
#73
lauren-fish
closed
2 years ago
5
Add learning-rate parameter
#72
Elhl93
closed
2 years ago
3
Solo encountering Nan values with 10x data
#71
symbiologist
closed
2 years ago
7
Allow specification of validation loss check interval
#70
georgiaschmitt
closed
2 years ago
1
python 3.6 incompatibility
#69
drneavin
closed
2 years ago
5
Allow user to change interval at which validation loss is checked
#68
njbernstein
closed
2 years ago
0
Solo on 10x genomics scRNA data
#67
rpauly
closed
3 years ago
3
Error on new solo version
#66
cnk113
closed
3 years ago
8
Finding solo installed version
#65
mmfalco
closed
3 years ago
2
Running error: "Resource temporarily unavailable"
#64
mmfalco
closed
3 years ago
2
h5ad for HashSolo & solo .pdf plots output
#63
DanSchnell
closed
3 years ago
2
Difference between is_doublet and preds
#62
ymahmoud
closed
3 years ago
2
To scvi tools
#61
njbernstein
closed
3 years ago
9
moving to scvi-tools
#60
njbernstein
closed
3 years ago
0
2c.h5ad doesn't contain gene names
#59
brianpenghe
closed
3 years ago
1
Performance testing
#58
njbernstein
closed
3 years ago
1
Performance testing
#57
njbernstein
closed
3 years ago
1
Problem with loom file
#56
marzamKI
closed
11 months ago
11
reproducible_seed
#55
njbernstein
closed
3 years ago
0
Limited reproducibility
#54
njbernstein
closed
3 years ago
2
Running solo on a sample as a batch job
#53
drlaurenwasson
closed
3 years ago
4
limited reproducibility
#52
grst
closed
3 years ago
4
Dataset10x Failing to Load
#51
drneavin
closed
3 years ago
3
scvi is deprecated
#50
adamgayoso
closed
3 years ago
8
Underestimation of doublets with data set that contains a lot of proliferative cells
#49
lenaschneehas
closed
4 years ago
3
ValueError: The parameter mu has invalid values
#48
drneavin
closed
3 years ago
13
Text file output
#47
njbernstein
closed
4 years ago
0
Can not read from remote repository
#46
thugib
closed
4 years ago
3
Output Recommendation
#45
drneavin
closed
4 years ago
4
Preprocessing Error - IndexError: tuple index out of range
#44
JonasMir
closed
4 years ago
6
scipy error
#43
dylanmr
closed
4 years ago
2
MemoryError
#42
reykajayasinghe
closed
4 years ago
2
Create notebook showing how to use and the benefits of Solo
#41
njbernstein
opened
4 years ago
1
h5ad dataset
#40
xinyiwangjuno
closed
4 years ago
1
Any pre-trained model
#39
JuanruMaryGuo
closed
4 years ago
3
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