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I was just browsing this repository when looking for good way to plot methylation data, and I read this sentence:
> For non-commercial Academic and Research purpose only!
This is **not** compat…
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Dear Raymond,
I am trying to run methylSig on RRBS data and I have a problem with diff_methylsig() function. I have a BSobj object with 5,791,812 cytosines, which I give as input to diff_methylsig(…
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### Contact Details
_No response_
### Scripts
03e-methylation_adjustment2.sh
### What happened?
Some cohorts reported all methylation PCs are genetic PCs so 03d script failed.
### How can the bu…
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sr320 updated
2 weeks ago
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Hi,
I'm wondering how the genetic variants on CpG sites are treated by aligned_bam_to_cpg_scores.
For example, when a diploid genome has a heterozygous SNP on a CpG site, how will the coverage and…
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Hi Dr. Wang,
I have just read your paper "A mouse model with high clonal barcode diversity for joint lineage,
transcriptomic, and epigenomic profifiling in single cells" and fairly interested in the…
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Hi, is there a log in MethylDackel that records how many reads/bases are lost to issues like reads being discordant, singletons, dupes, or bases being below Q-score threshold, etc.?
Would it be pos…
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A submission for an existing entry was performed via the MITE Submission portal.
Please find the file in the code block below.
### Labels
https://github.com/mite-standard/mite_data/labels/review
##…
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not global -- not spam users.
Not sure related to rendering as I tried to also post a comment of simple "Thank you!" and received `Language "so" is not one of your supported languages ['en']!` b…
lshep updated
10 months ago
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Initial thoughts and proposals outline below, based on info collected in the requirements doc [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleLemY/edit#heading=h.b3a9…