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Hi all,
I ran the following command line:
$ anvi-display-pan -p Pangenome2021/Pangenome2021-PAN.db -g C-GENOMES.db -t tree-newick-gtdb
I got the following error
![image](https://user-images.git…
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Hey,
When I used remote CMD tool like ```xshell``` to use Anvi'o ```anvi-display-pan -p PROJECT-PAN.db -g PROJECT-PAN-GENOMES.db``` (http://merenlab.org/2016/11/08/pangenomics-v2/) on remote server…
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Hi Dr. Ou.
I use LTR_retriever to analyze my genome. However, the number of intact LTR is much less than I expect and the LAI value is low. So I want to use the result of LTR_retriever to go back to …
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Hello, it's me again.
After finally putting SQMtools to work thanks to your help, I find myself again facing some problems (or at least I think so). As I said on my first topic here, I'm working wi…
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Hello,
I must mention that I am working with 557 genomes on Linux Ubuntu.
I am trying to perform pan-genome analysis and core genome alignment. But Pirate doesnot detect the mafft package. log file …
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## Short description of the problem
If you run `anvi-estimate-metabolism --metagenome-mode` and then use the modules mode output for `anvi-estimate-functional-enrichment`, the enrichment script is …
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## Short description of the problem
There is too much logging in the south loop.
## anvi'o version
On master branch commit: 5b9facaa
```
~/projects/anvio/bin/anvi-self-test --version
Anv…
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## Short description of the problem
Many, most, or all commands will not display --help and fail with errors like the following:
```
UnicodeEncodeError: 'ascii' codec can't encode characters in p…
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Originally posted on RAGOO's github on 11/25/2020 (my bad!)
Hi there,
Recently I ran RagTag on a scaffolded assembly (created with long read sequences and HiC data) from a plant allopolyploid - …
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## Short description of the problem
`anvi-script-get-primer-matches` failed to summarized the output.
## anvi'o version
```
Anvi'o version ...............................: esther (v6.2-mas…