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Hi there!
Inew here and I got a problem about the conception.
From what I understand, the correlation coefficient in this context refers to the power model (I chose HW) and the real trace. Since …
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When fixing the FOV of the spectrometer (instead of calculating it by correlating with the optical-depth image stack), I'm not certain that the radius works correctly - i.e. is fixing the radius repro…
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Hi @smorabit ,
I have been running hdWGCNA on a number of datasets from past couple of days. They were seem to be running perfectly fine and then these two things happened.
1. When I'm process…
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https://mp.weixin.qq.com/s/DfaHcAOm9UtfonbxXRHqiQ
ixxmu updated
8 months ago
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-Change ERC_analyses.py so that both pearson and spearman correlation analyses are calculated. This means that the user will no longer need to choose spearman vs pearson, both are calculated automatic…
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Hello,
Thank you for sharing your work. It is very helpful and inspiring.
Would it be possible for you to share the evaluation code (e.g. observed versus expected Hi-C matrices correlation, dis…
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I used deeptools 3.4.2 and its plotCorrelation module and generated following figure:
![scatterplot_all_C4_w_label_MapQ30_bl](https://user-images.githubusercontent.com/47798557/80571414-971ed200-89ca…
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### Describe your issue.
I cannot run Pearson correlations with `stats` from `scipy`
### Reproducing Code Example
```python
`from scipy import stats
stats.pearsonr(df['X'], df['y'])`
```
### E…
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https://mp.weixin.qq.com/s/OY8ZLh_XltOQG5ZRhey6gA
ixxmu updated
7 months ago
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I am slightly confused about what the background genes should be in the analysis. In this [vignette](https://github.com/saeyslab/nichenetr/blob/master/vignettes/seurat_steps.md): the background genes…