-
### Contact Details
d.m.soanes@exeter.ac.uk
### What happened?
Microarray data was not cell sorted
The first part of the QC pipeline seemed to work fine:
1: Column names were correct
2: raw.gds …
-
### Description of feature
I am trying to test the pipeline and I have executed nextflow run nf-core/sarek -profile test,conda --outdir test_directory
It starts running but returns the following err…
-
If doable, we should look into adding support for using [MuTect2](https://software.broadinstitute.org/gatk/documentation/tooldocs/3.8-0/org_broadinstitute_gatk_tools_walkers_cancer_m2_MuTect2.php) ins…
-
Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
-
### Contact Details
d.m.soanes@exeter.ac.uk
### What happened?
Microarray data was not cell sorted
The first part of the QC pipeline seemed to work fine:
1: Column names were correct
2: raw.gds …
-
Hello,
First of all - thank you, @mr-c, for the response to my previous problem!
I've been further trying to run emg workflows, specifically emg-pipeline-v4-paired.cwl, on my machine. I have run…
aperz updated
6 years ago
-
Hi @rpetit3
We just tried to analyze only the Nanaopore reads, but seems it skipped the `CALL_VARIANTS` part.
May I ask it is possible to include the `CALL_VARIANTS` analysis in the pipeline wi…
-
Hi there,
Thanks for this great container, very helpful.
However, I have some troubles at species and pathovars level.
1) I need primers for a particular bacterial species. There are 14 genomes a…
-
### Title
Scrubbing with clinical samples
### Leaders
Ju-Chi Yu (Twitter: @juchiyu / Mattermost: @juchiyu) and Jerrold Jeyachandra (Mattermost: @jerdra)
### Collaborators
_No response_
### Brain…
-
To connect the PASS1B-06 DEA results data to the phenotypic data, we need to map each unique `feature_id` (present in the DEA results) to a list of associated `vial_label` (present in the phenotypic d…