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Hi KarchinLab:
This error occurred when 2020plus was about to run to completion.
2020plus_10k.Rdata has already located in the `/data` directory. `../../2020plus/2020plus-1.2.3/data/2020plus_10k…
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I was recently added as a collaborator on the repository for the [`vim-snakemake`](https://github.com/ibab/vim-snakemake) plugin. Per [discussion in this issue](https://github.com/ibab/vim-snakemake/i…
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**Snakemake version**
6.9.1
**Describe the bug**
When a script contains a line `from __future__ import {some future behaviour}` python raises a syntaxerror as snakemake inserts a few lines of…
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The report file in CNVand is outdated and should be updated and checked to allow users a better experience with the pipeline.
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Hello.
(edited for clarity)
I was wondering if it is possible to specify the mapq threshold for read filtering in pore-c-snakemake. Now, I have to calculate all those stats (contacts per GB, cis/tr…
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Not sure if you've seen this same issue on the snakemake side?
https://github.com/transXpress/transXpress-nextflow/issues/16
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Some of the options to test:
- [ ] add copying over of the env yml files to condaEnvDir (done by snakemake, not done by `snakePipes createEnvs`)
- [ ] strip write permissions for group
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```
python -m pip install --upgrade '.[reana,local]' 'pyyaml>=6.0'
```
```
...
ERROR: Cannot install pyyaml>=6.0, reana-commons[snakemake,yadage]==0.8.0, reana-commons[snakemake,yadage]==0.8.1,…
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Hi!
Thank you so much for publishing the pipeline but I am having some errors getting the pipeline working properly.
Starting with the igraph version error, adding in louvain and cairocffi as …
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We cannot currently update our build system to the latest (most optimised) version of `python` (3.12) due to the following:
- originally we were awaiting a fix from `node-gyp`, detailed here:
- …