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Hello Spades,
My assembly is missing about 300 kbp in the final assembly. I am using paired end reads with the --careful option, but have tried many other options for optimizing the assembly inclu…
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Hi
I am trying to run metaspades on some metagenomic samples. SPAdes always gets stuck at a particular step. K55 collecting edge information. It remains stuck here for hours. Can you please tell me w…
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Hello, i would like to be able to tag an function that is finished and private in a class so it will normally not show in vs and the spade at all.
This way i could hide internal functions that need n…
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Hi, I am trying to assemble a plasmid using paired-end Illumina reads from a whole genome sequence with Oxford Nanopore long reads from a plasmid DNA extraction from the same organism.
The command …
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Noted today while parsing mtDNA GenBank files from NCBI:
BiopythonParserWarning: Structured comment not parsed for NC_037500. Is it malformed?
BiopythonParserWarning: Structured comment not parsed…
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```
Setting up a new development environment requires manual work. We don't have
dependencies information except in wiki from which user has to dig out
information.
AutoConf script takes some care …
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Hello,
Unicycler has been repeatedly crashing while running a hybrid assembly with Illumina reads + GridIon long reads.
The error is (in more than 3 attempts):
/software/pathogen/internal/prod/bin…
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Hi there,
I've just started using PLASS, specifically `plass assemble`, and I really like it!
This isn't an issue but a potential enhancement. I was wondering how I might be able to recover abun…
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```
Hi, I use the Kate Spade design --
https://tools.google.com/chrome/intl/de/themes/theme_at_katespade.html -- in my
Chrome 7.0.517.44.
Unfortunately the KB SSL toolbar button (version 0.0.3) is …
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