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The local frequency (annotated from loqusdb dump) should be shown on the structural variantS pages (both RD and cancer). It is probably a Good Idea to add an Observation column to the SV pages in addi…
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### Assembly Region
chr4_MATERNAL:167992908-167998946
### Assembly Version
v0.7
### hifi_evidence subregions
167992908-167998946 (Low_AT)
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See this example https://beta.cbioportal.mskcc.org/study/summary?id=um_tcga
And `other_patient_id` `other_sample_id` can't be hidden by default even if the priority is set to `0`
Related pr:
http…
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The following code snippet:
```ocaml
module Wrapper = struct
type x = { a : int; }
(* structurally identical records *)
type y = { a : int; }
end
open Wrapper
type _ witness =
| …
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Hi Rick,
I'm sorry for interrupting you again.
I have one question.
In the Fig 2' legend in your preprint, you showed that:
> singletons that have been rephased by the SAPPHIRE method (43% of …
koido updated
9 months ago
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Hi,
i used the command "~/software/vg autoindex -t 60 --workflow giraffe --target-mem 240G -r genome.fa -v LG01.vcf.gz -p pangenome" to create index, but i got an error "slurmstepd: error: Detected …
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Hi there,
I'm interested in using the StructuralVariantAnnotation package to find overlapping SVs within selected regions of interest, across different SV callers (namely GRIDSS and Manta). In par…
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Consensus seems to be to keep existing skills and do mergers. Since Lokathor already has them formatted for LaTeX, we can probably start on the merging and errataing... just as soon as we know what th…
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_Opening this as [requested](https://github.com/w3c/csswg-drafts/issues/8738#issuecomment-2061898533) by @astearns_
In #8738 we resolved to stop hoisting interleaved declarations and introduce an `…
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I'm using clair3 (Ive tried 1.0.0 and 1.0.4) to do some structural variant calling. Currently I'm just doing some testing on the 37 variant of this GIAB-genome: https://ftp-trace.ncbi.nlm.nih.gov/Refe…