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PapenfussLab
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StructuralVariantAnnotation
R package designed to simplify structural variant analysis
GNU General Public License v3.0
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ERROR in converting gGrange to vcf
#45
9421g
opened
1 week ago
0
could not find function ".assertValidBreakpointGRanges"
#44
selmapichot
closed
10 months ago
2
Subset by multiple seqnames
#43
nuttynutmore
closed
11 months ago
3
Version compatible with R 3.6?
#42
pauline-ng
closed
1 year ago
2
Preserving Info Fields with breakpointgr2bedpe()
#41
blex-max
opened
1 year ago
2
Bioconductor Forum Not Monitored
#40
DarioS
closed
2 years ago
1
manta somaticSV.vcf as input for StruturalVariantAnnotation
#39
brewert2
closed
2 years ago
1
Use SVLEN not END
#38
d-cameron
opened
2 years ago
0
Use ALT field instead of SVTYPE for determining symbolic allele type
#37
d-cameron
opened
2 years ago
0
Add support for LongRanger UNK and IMPRECISE_DIR
#36
d-cameron
opened
2 years ago
0
Interpretation error for breakend records with SVTYPE!=BND
#35
d-cameron
opened
3 years ago
0
This package only takes BND notation vcf ?
#34
yangyxt
closed
3 years ago
4
Retrotransposed Transcripts and Mitochondrial Fusions Functions Missing from Bioconductor Download
#32
DarioS
closed
3 years ago
4
How to use single breakend to increase detection sensitivity for insertions
#33
tgong1
opened
3 years ago
2
GRanges 'vcfid' and multisample VCF input
#31
brucemoran
closed
4 years ago
4
License
#30
cbrueffer
closed
4 years ago
0
Merging SVs
#29
gdeoli
opened
4 years ago
1
Missing %na% function in Bioconductor release version
#28
roelj
closed
4 years ago
2
Error: nrow of `region1` and `region2` differ.
#27
adbeggs
closed
4 years ago
1
Error loading vcf with some SV types
#26
cboursnell
opened
5 years ago
1
<CNV> not supported
#25
d-cameron
opened
5 years ago
0
Manta VCF: error in drawing circos plot
#24
TendoLiu
closed
4 years ago
1
Add more vignette examples explaining `findBreakpointOverlaps()` parameters.
#23
oalavijeh
closed
5 years ago
3
Export a few useful functions.
#22
cbrueffer
closed
4 years ago
0
Fix grammar issues and typos in the vingette and function documentation.
#21
cbrueffer
closed
4 years ago
0
Unrecognised format for variants in CHM Huddleston2016 truth sets
#20
lsantuari
closed
5 years ago
4
annotate the output of GRIDSS with SVLEN and SVTYPE
#19
Fred-07
closed
5 years ago
5
Getting duplicated error
#18
beginner984
closed
5 years ago
1
Getting this annotation for manta .vcf
#17
beginner984
closed
5 years ago
3
Installation error related to R version
#16
tgong1
closed
5 years ago
1
%na% Missing During Test
#15
DarioS
closed
5 years ago
1
Extracting this information from .vcf file
#14
beginner984
closed
5 years ago
6
Merging Bioconductor packaging changes
#13
d-cameron
closed
5 years ago
0
Biologically Annotate Insertions
#12
DarioS
closed
5 years ago
4
̦Problem extracting partner QUAL score from breakpointRange
#11
andrwb
closed
5 years ago
5
Sample Names not given in simplebed file
#10
nikitagambhir
closed
5 years ago
3
What is the minimum length of a mutation that is annotated as a Structural Variant?
#9
nikitagambhir
closed
6 years ago
2
Inversion custom attributes not handled for DELLY or manta
#8
d-cameron
closed
6 years ago
0
Packaged
#7
lachlansimpson
closed
5 years ago
2
Easy way to make a long data frame of by-input category information
#6
l-d-s
closed
7 years ago
1
Fix package for installation sanity
#5
lachlansimpson
closed
8 years ago
4
Installation fails
#4
lachlansimpson
closed
8 years ago
0
BreakpointGRanges.R function name clash
#3
d-cameron
closed
5 years ago
0
Extend unpack caller support
#2
d-cameron
closed
7 years ago
0
unpack names unpacked columns incorrectly when dropping column
#1
d-cameron
closed
5 years ago
1