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I just saw the preprint and KAGE looks like a promising alternative to GATK.
Would it be possible to use KAGE to genotype ancient DNA samples? The golden standard at the moment seems to be pileupC…
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#### Output of `cutechess --version`
Cute Chess 1.2.0
#### Steps to reproduce
1. Game > New...
2. Variant: Atomic, FEN string: `r3k2R/4K3/8/8/8/8/8/8 b q - 0 1`, click OK
3. Try to castle lon…
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It needs filling in.
@SarahKit can write content?
drj11 updated
7 years ago
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1. Report the number of:
- (i) SNPs = 52
- (ii) indels = 10
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It is relatively difficult to figure out which modules to import.
I wonder if we can define something like this
```
# gpc_defaults.py
import genophenocorr
from genophenocorr.analysis import co…
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I really like NOJAH as a tool for GW cluster analysis, but a lot of its elements are broken. Just enough about it works such that it can get through the genome-wide cluster analysis tab. The combined …
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/193) by medhat helmy (Bitbucket: [mehelmy](https://bitbucket.org/mehelmy), GitHub: [mehelmy](https://github.com/mehelmy)).**
--------…
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```
we need a relationship that aids in describing the susceptibility of a disease
due to variation(s) of genomic regions.
for example:
http://omim.org/entry/607339
this entry describes variants in…
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When I call ./ldsc_preprocess.py -h it runs and I successfully get the "sg.txt.gz" and "ce.txt.gz". However when I attempt to check the log file I get the following error:
ValueError: Found Allele …
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Do we need to/should we include hub forecasts as a comparison for each case study?