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https://mp.weixin.qq.com/s/77iajQfe7LibaApzrr8nkA
ixxmu updated
2 years ago
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Hello,
I recently found about LRSIM which seems to be super useful for gaining better understanding of SV tools.
However, I'm trying to generate a toy dataset, and then align it to a reference w…
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Inspired by #34, I was wondering whether we could have a `DualMatrixSeed` that itself contains two seeds, both of which point to the same data but one of which is optimized for row access and the othe…
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Hi,
I am using the dataset mentioned in the notebook linked to this rep.
The link to download the data is [ftp://ngs.sanger.ac.uk/production/teichmann/BBKNN/PBMC.merged.h5ad](ftp://ngs.sanger.ac.u…
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We should demonstrate the utility of Milo on another real experimental condition, on top of age. This should be something like KO vs WT or disease VS healthy. Possible candidates:
- Stimulated VS u…
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I ran the following to create the infercnv object (I don't have any reference cells so I set ref_group_names = NULL as suggested by the wiki):
infercnv_obj = CreateInfercnvObject(raw_counts_matrix=…
s2hui updated
3 years ago
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https://mp.weixin.qq.com/s/YYJWbluM86rp9y4CNHBKpQ
ixxmu updated
3 years ago
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https://mp.weixin.qq.com/s/YYJWbluM86rp9y4CNHBKpQ
ixxmu updated
3 years ago
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Rich Silva
Jun 4, 2020, 9:16 AM
to me, Kevin
Data Sets
CMG
CCDG
eMerge - Electronic Medical Records and Genomics Network
CSER - Clinical Sequencing Evidence-Generating Research
Human Pan Genome Refer…
kozbo updated
3 years ago
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Is there a easier way to import 10x scRNAseq and scATAC sea data into create_scAIobject? Is there a walkthrough using 10x genomics data?