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Hello,
This suite of standalone programs is exactly what I have been searching for, so thank you and your lab group so much for putting all of the pieces together and integrating all of these tools…
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Hello,
at first, I would like to thank you for dada2. I try to analyze microbiome of soil samples using this software and I have found some problems. Therefore, I would like to ask you for some advi…
JoBrz updated
5 years ago
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Hi there,
congrats on this amazing tool! I was wondering whether you have had the chance of (or planning to) evaluating DADA2 on T-cell/B-cell receptor data. Antigen receptor amplicons are conceptu…
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Hi,
I am running Evaluate_diversity.sh but I am not sure about -d . Here is my reads information. Please let me know which number should I give for -d here.
In logfile.txt it is showing "Number of b…
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**Submitting author:** @RafalUrniaz (Rafal Urniaz)
**Repository:** https://github.com/RafalUrniaz/kmeRs
**Version:** 1.1.0
**Editor:** @csoneson
**Reviewer:** @jlincbio, @VivekTodur
**Archive:** Pendi…
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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** 0.1.2
**Editor:** @majensen
**Reviewers:** @rcannood, @corybrunson
…
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[PeptideShaker.log](https://github.com/compomics/peptide-shaker-2.0-issue-tracker/files/4495872/PeptideShaker.log)
My commands:
java -cp PeptideShaker-2.0.0-beta.jar eu.isas.peptideshaker.cmd.Re…
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Copy-paste of email below:
> Fwd: Methods in Ecology and Evolution - Decision on Manuscript ID MEE-19-08-613
>
> 29 October 2019 11:15 42 KB
> From: Giovanni Laudanno
> To: Rampal S. Etienne, R…
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Does anyone know if DADA2 corrects sequence errors arising from PCR or just those that occur during Illumina sequencing? Looking at the documentation, it's clear that the algorithm corrects for sequen…
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Annotations to 'GO:0052157 modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response' are to gene products that get recognized by the host. This is not an acti…