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e.g. using https://github.com/peterjc/galaxy_blast as an example,
``` bash
$ planemo --version
planemo, version 0.18.1.dev0
$ ls -a packages/package_blast_plus_2_2_31
. .. .shed.yml tool_dependen…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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Hi,
I tried to install cuteSV via pip and via the git repository, but it failed both times with an error involving PyVCF (see code snippet below).
It seems to be the same issue as described here: …
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Hi,
I got a ModuleNotFoundError when testing the RiboCode installation with `RiboCode_onestep -V`
Can you help?
```
$ RiboCode_onestep -V
Traceback (most recent call last):
File "/nexus/posi…
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hi,
after the upgrade the user interface comes up without warning but during install the following error message appeared:
Installing collected packages: requests, pillow, numpy, configparser, m…
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Hi Folks,
I have recently installed PneumoCaT onto our Galaxy instance (which is connected to our HPC cluster using PBS).
Unfortunately, when I try to run it, these are the ouputs I am getting i…
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Hello, I have installed a higher version of pyg due to gpu configuration, but the dataset you provided was processed using pyg==1.6.3, is it possible to provide the code you used to process the data? …
-
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
3.9.13 | packaged by conda-forge | (main, May 27 2022, 17:00:52)
[Clang 13.0.1…
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#### Summary:
Attribute error whenever I am trying to use **_average_nucleotide_identity.py_** command, having downloaded pyani v0.2
#### Description:
I have downloaded pyani v0.2, and had to dow…
-
### Setup
I am reporting a problem with Biopython version 1.79, Python version 3.9, and operating
system Ubuntu 20.04:
I'm trying to download PDB files from a list of PDB IDs that I have, an…