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**Is your feature request related to a problem? Please describe.**
This is to address consistency in the bioscales data
**Describe the solution you'd like**
Ability to compare Bioscales metaG met…
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```shell
grep -r -c slot_usage src/schema | grep -v ':0'
```
> ```
> src/schema/prov.yaml:1
> src/schema/annotation.yaml:3
> src/schema/core.yaml:11
> src/schema/nmdc.yaml:13
> src/schema/wo…
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I am experiencing an issue when attempting to download the 'metadata.tsv' file from the ENCODE project using the provided URL. The download has been inconsistent, yielding different results when using…
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I'm trying to bulkload other identifiers that include some new flavors of GenBank identifiers that are not, actually, GenBank but rather different databases at NCBI, such as BioSample (which is in Arc…
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# This ticket is deprecated. Please refer to [this](https://github.com/microbiomedata/nmdc-runtime/issues/355) Github issue and [this](https://docs.google.com/spreadsheets/d/1a9cN9ZDyjVOp6NtHiaUlpP_92…
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Hi,
I'm trying to extract scRNA-seq fastq files and this tool works great! However, I was wondering if there was an option to get all the files in a paired-end sample? I only am getting one file ba…
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### File
https://github.com/microbiomedata/notebook_hackathons/blob/soil-contig-tax/taxonomic_dist_by_soil_layer/python/mongodb_query.txt
### Syntax highlighting difference (excerpt)
As `.txt…
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Starting from a Study ID, implement a tool that will extract related Entities and produce a YAML output.
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User metadata can be validated using pandera validation. This will allow for metadata field requirements based on a schema file. This will allow seqsender to automatically detect issues with user meta…
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Hi!
Thank you for having created this atlas, I really like your work!
I have a few questions about the metadata in the scanpy .h5ad object that I downloaded from the link in your readme. In par…