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microbiomedata
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nmdc_notebooks
Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data
Creative Commons Zero v1.0 Universal
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Add Git Versioning Docs
#51
brynnz22
opened
1 week ago
1
Upgrade package versions in `renv` to resolve gcc errors during environment setup on Ubuntu
#50
bmeluch
opened
2 weeks ago
1
Fix typo on CONTRIBUTING.md and add to PR template
#49
kheal
closed
2 weeks ago
0
[BUG] Typo in CONTRIBUTING.md
#48
kheal
closed
2 weeks ago
0
27 dill required in multiple notebooks but not stated in dependencies
#47
samobermiller
closed
2 weeks ago
1
Update README.md
#45
kheal
closed
4 weeks ago
0
[BUG] Broken link to Contributing.md on the Readme
#44
kheal
closed
4 weeks ago
0
Update repo-level documentation
#43
kheal
closed
4 weeks ago
1
Add R notebook for taxonomy
#42
kheal
opened
1 month ago
1
Add repo-level documentation
#39
kheal
closed
4 weeks ago
1
Implement Github Versioning and Releases
#37
brynnz22
opened
1 month ago
1
Add check to prevent key errors for lacking metadata in neon_soil_example
#35
kheal
closed
1 month ago
4
Create R notebook to explore processed data for a second 'omics data type
#34
kheal
opened
1 month ago
0
Create python notebook to explore processed data for a second 'omics data type
#33
kheal
opened
1 month ago
0
Create R-based notebook to explore taxonomy
#32
kheal
opened
1 month ago
2
Add notebook using sparql-dataframe library in python
#31
turbomam
opened
2 months ago
3
pprint, defensiveness, pure matplotlib
#30
turbomam
opened
3 months ago
1
defensiveness, dill and pprint
#29
turbomam
closed
3 months ago
0
Defensive programming/decrease assumptions: Try/catch for `KeyError: 'geo_loc_name'`
#28
turbomam
closed
1 month ago
0
`dill` required in multiple notebooks but not stated in dependencies
#27
turbomam
closed
2 weeks ago
1
statsmodels required for bioscales.ipynb
#26
turbomam
closed
3 months ago
0
require statsmodel
#25
turbomam
closed
3 months ago
0
Soil contig tax
#24
brynnz22
closed
6 months ago
6
Convert all R notebooks to jupyter exclusively
#23
kheal
closed
7 months ago
1
Prepare and release Bio-Scales notebooks for exploration
#22
kheal
closed
7 months ago
0
Add bioscales python notebook
#21
brynnz22
closed
7 months ago
1
Rename `.txt` file to `.txt.js` to enable syntax highlighting
#20
eecavanna
closed
7 months ago
3
R example for bioscales, small mods on readmes
#19
kheal
closed
7 months ago
0
Add Readme for Bioscales
#18
brynnz22
closed
7 months ago
0
Add R notebook for exploring bioscales metadata
#17
kheal
closed
7 months ago
0
Add Overview section at top of main Readme
#16
brynnz22
closed
7 months ago
0
Bioscales notebook
#15
brynnz22
closed
7 months ago
0
Neon new notebook py
#14
brynnz22
closed
7 months ago
0
mods on rmd, concerning the R portion of #11
#13
kheal
closed
7 months ago
0
Removed binder links, update Rmd to just look at soil samples.
#12
kheal
closed
7 months ago
0
Pull out biosample type from NEON pH notebooks
#11
brynnz22
closed
7 months ago
1
Added binder and google colab links for existing R and python notebooks
#10
kheal
closed
8 months ago
0
Brainstorm and create new notebook that only uses Biosample endpoint ahead of Dec. 5 NEON meeting
#9
brynnz22
closed
7 months ago
1
Add Notebook for Contig-Soil Taxonomy Question
#8
brynnz22
closed
6 months ago
1
Add links for Google Colab for jupyter notebooks
#7
kheal
closed
8 months ago
0
Cull dependencies
#6
kheal
closed
8 months ago
0
Add binders
#5
kheal
closed
8 months ago
0
Readmes and R work
#4
kheal
closed
8 months ago
1
Add narrative about where to find the API documentation
#3
kheal
closed
7 months ago
2
Evn python
#2
brynnz22
closed
8 months ago
0
Move folders
#1
brynnz22
closed
8 months ago
1