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microbiomedata
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nmdc_notebooks
Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data
Creative Commons Zero v1.0 Universal
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Modularize Python API wrapper functions
#97
bmeluch
opened
3 days ago
0
Translate functional enrichment analysis notebook into R
#96
bmeluch
opened
3 days ago
0
Create notebook that performs functional enrichment analysis on a set of proteomics samples
#95
bmeluch
opened
3 days ago
0
Translate protein functional annotation notebook into R
#94
bmeluch
opened
3 days ago
0
Create a notebook exploring functional annotations in a single proteomics sample (Python)
#93
bmeluch
opened
3 days ago
0
Translate omics data integration notebook into Python
#92
bmeluch
opened
3 days ago
0
Create notebook integrating 2 or more omics types (R)
#91
bmeluch
opened
3 days ago
0
Modularize R API wrapper functions
#90
bmeluch
opened
1 week ago
0
Link Checker Report
#88
github-actions[bot]
closed
1 week ago
1
Link Checker Report
#87
github-actions[bot]
closed
3 weeks ago
1
Link Checker Report
#86
github-actions[bot]
closed
4 weeks ago
1
Link Checker Report
#85
github-actions[bot]
closed
1 month ago
1
Updated CHANGELOG.MD for Release v2.0.0
#84
samobermiller
closed
1 month ago
0
Link Checker Report
#83
github-actions[bot]
closed
1 month ago
1
Link Checker Report
#82
github-actions[bot]
closed
1 month ago
1
Update CHANGELOG.md
#81
brynnz22
closed
1 month ago
0
Update API calls in NOM visualizations to reflect Berkeley schema
#80
samobermiller
closed
1 month ago
4
Link Checker Report
#79
github-actions[bot]
closed
1 month ago
1
Link Checker Report
#78
github-actions[bot]
closed
1 month ago
1
Add NOM notebook links to main README
#77
bmeluch
closed
1 month ago
0
Add new NOM notebook links to main README
#76
bmeluch
closed
1 month ago
0
Link Checker Report
#75
github-actions[bot]
closed
2 months ago
1
Update PULL_REQUEST_TEMPLATE.md
#74
kheal
closed
2 months ago
1
Link Checker Report
#73
github-actions[bot]
closed
2 months ago
0
Remove gh workflow for checking links on Pull Requests
#72
kheal
closed
2 months ago
0
[BUG] github workflow fails with "not valid yet links"
#71
kheal
closed
2 months ago
0
Link Checker Report
#70
github-actions[bot]
closed
2 months ago
1
Add R notebook exploring natural organic matter data
#69
bmeluch
closed
2 months ago
10
Create python notebook to explore processed NOM data
#68
samobermiller
closed
2 months ago
26
Link Checker Report
#66
github-actions[bot]
closed
3 months ago
1
Refactor notebooks to be compliant with berkeley rollout
#65
kheal
closed
1 month ago
9
Link Checker Report
#64
github-actions[bot]
closed
4 months ago
1
Add github workflow for checking notebooks
#63
kheal
closed
4 months ago
1
Implement Github action that tests all notebooks on PR and once per week
#62
kheal
closed
4 months ago
0
Add github workflow to check that links in repo are good
#61
kheal
closed
4 months ago
1
59 githubaction urlchecker
#60
kheal
closed
4 months ago
1
Implement Github action that checks that all urls resolve (should trigger on PR)
#59
kheal
closed
4 months ago
0
Move python API functions to separate py script and source
#56
samobermiller
closed
4 months ago
1
[FEATURE REQUEST] Implement github actions
#55
kheal
closed
3 months ago
1
Updates links in all readmes to point to new repo location
#54
kheal
closed
4 months ago
0
Refactor R package management system and clean up R dependencies
#53
kheal
closed
4 months ago
0
[BUG] Need to update all links in READMEs to reflect up-to-date repo loction
#52
kheal
closed
4 months ago
0
Add Git Versioning Docs
#51
brynnz22
closed
4 months ago
2
Upgrade package versions in `renv` to resolve gcc errors during environment setup on Ubuntu
#50
bmeluch
closed
4 months ago
3
Fix typo on CONTRIBUTING.md and add to PR template
#49
kheal
closed
5 months ago
0
[BUG] Typo in CONTRIBUTING.md
#48
kheal
closed
5 months ago
0
27 dill required in multiple notebooks but not stated in dependencies
#47
samobermiller
closed
5 months ago
1
Update README.md
#45
kheal
closed
5 months ago
0
[BUG] Broken link to Contributing.md on the Readme
#44
kheal
closed
5 months ago
0
Update repo-level documentation
#43
kheal
closed
5 months ago
1
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