-
**Proposed new lineage 1**
Currently misclassified as B.1.629, and used to be misclassied as B.1.416 before Pango v.3.1.10 (7 sequences from Nelson Mandela Bay, Eastern Cape, South Africa)
**Earlies…
-
We uploaded several files for clade identification. Two of our SARS-CoV-2 Spike gene sequences had the identical 8 mutations and 3 deletions: Your software identified one as a 20H/501Y.V2 (which accor…
-
Sublineage of B.1 (7 samples)
Earliest sequence: 30.04.21 (Mexico)
Most recent sequence: 17.06.21 (Mexico)
Shares all the mutations of B.1.635 except for :
NSP13:V479V (Synonymous mutation at Nu…
-
Hi,
I have the follwoing error
```
USAGE: [PATH] [annotation] [names] [OUTDIR] [outgroup]
outgroup is Outgroup
True ['Pabies', 'Pglauca', 'Interior', 'Psitchensis', 'Pengelmannii'] Spruce
True […
-
The definitions for 'molar tooth' and 'incisor tooth' seem to restrict these to mammals. However see the sheepshead fish (Archosargus probatocephalus):
http://blogs.scientificamerican.com/running-pon…
-
Hi,
I was trying to run the nextstrain to align and generate a tree for a list of fasta nucleotide sequences coming from a targeted sequence of the S gene.
I have update the build.yaml to lower in…
-
I was wondering if you have something similar to this:
https://github.com/nextstrain/ncov/blob/master/defaults/clades.tsv
for pangolin?
I'm basically looking for an overview of the nucleotide cha…
-
## New lineage proposal
by Michael K. Edwards
### Description
Sub-lineage of: B.1.617.2
Earliest sequence: collected 2020-11-21
Most recent sequence: Now.
Countries circulating: Global.
I …
-
Hello developers / collaborators
While trying to use Your scrapper and pipeline, i came acrtoss couple of problems regarding couple of steps:
1. In task_fasta_to_clades there is no information about…
-
When viewing B.1.1.7 and B.1.351 sequences via [clades.nextstrain.org](https://clades.nextstrain.org/) (v0.14.1), some of the expected deletions are reported at unexpected indices:
**B.1.1.7**
|…