-
```
What steps will reproduce the problem?
1. Save a Beauti file with the SRD06 setting
2. Reopen the saved file and the settings have reverted to default settings -
see email below for more details.…
-
Hi,
Thanks for your awesome pipeline, which is a very useful and user-friendly especially for those just starting out in bioinformatics. Could you please tell if you plan to add the ability to use no…
-
Currently, some of the parameters ($\Delta\eta$, $s_{\phi}$) in our models have improper priors (i.e. a uniform defined on $(-\infty,\infty)$). I would like to ensure all models' parameters have prope…
-
Hi there,
Thanks for developing such a great tool for the community.
I am trying to run the example data and stuck at the very begining. It looks like several of the python scripts begining wi…
-
**Are you using the latest release?**
I am using version 1.8.7
**Describe the bug**
Funannotate update fails at the end while comparing annotations. 2 models have no ID. I ran train and predict, …
-
I run fungap on Docker and I get this error :
[Wrapper] /workspace/FunGAP/catch_bad_genes.py --gff3_files /fungap_workspace/fungap_out/augustus_out/augustus.gff3 /fungap_workspace/fungap_out/maker…
-
The following code triggers a segmentation fault. If there is not 'logging' module in the current directory, codon crashes.
test.py:
`from . import logging `
Reproduce:
codon/codon-linux-x86_6…
-
Hi,
I'm having issue with checkGTF when running on gtf file dowloaded on Genbank database :
Here the GTF file :
```
#gtf-version 2.2
#!genome-build ASM3821986v1
#!genome-build-accession NCBI…
-
Hello,
I tried running RiboseQC on bam files obtained with another RiboSeq analysis pipeline called riboflow.
The analysis fails at the P-site step:
`Calculating P-sites offsets ... Mon Jun 2…
-
Let's suppose i have two programs for production, in the first i used codon to compile it but didn't include the codon compiler inside, in the second i still used codon to develop it but this time i i…