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Hi,
I had a question about the DSC_estimated_error_rates.pdf calculation. For one example sample, for one specific trinucleotide context, I tried to reconstruct the calculation:
ACG>T = 150 -> co…
gevro updated
7 months ago
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Hi,
For very bad alignments with a lot of gaps, is it possible to fill them using the reference instead N's?
Thanks!
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Hi,
I've built a tree using a set of software tools and I would like to root the tree using iqtree2/UNREST. I tried running `iqtree2 -m 12.12 -s alignment.fasta -te tree.tre` but I get the followin…
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## Expected Behavior
Hello, I am mapping a small database of peptide k-mers 8-15 AA length (8,408 sequences, summary length of 77,356) to a translated genome sequence database (756,891 sequences, sum…
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Create a JSON with patterns provided in #1532. This can be provided to the frontend by API, as file from data ...
**Dependencies:**
* #1532
**Blocker for:**
* #1522
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# Introduction
This thread is for discussing how we can adopt invariants to a much higher degree than today.
# Terminology and background
Invariants were added in version 9.0.0 as opt-in.
Mo…
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**Describe the bug**
OpenVPN sends the `READY=1` sd_notify message to systemd once it has completed initialisation, before the VPN tunnel is established. This means that systemd units that depend on …
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Hello,
There are some other issue reports that are similar such as [racon stuck at generating consensus](https://github.com/isovic/racon/issues/64) and [I'm not sure if Racon is stalled or just ta…
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We have a subset of 60 samples from [Karthikeyan et al.](https://doi.org/10.1038/s41586-022-05049-6) that show a transition between delta and omicron variants.
To run it live in a workshop we need t…
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Hi,
I am relatively new to racon. I am trying to polish noisy long reads (pacbio) using hi-fidelity long reads (pacbio).
I am using pbmm2 (SMRT C++ wrapper for minimap2's C API) for alignment:
…