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Hi Drs,
I tried to use this software to run learnErrors. I have been running for three or four days with no results, how can I solve it?
reads.in reads.out
Gr1m1-1_R1_00…
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### Description of the bug
Hi,
I had issues running a few samples through viralrecon 2.5 with ivar_variants_to_vcf.py so I decided to run it on the dev branch and it made it past those errors but …
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### Description of the bug
I installed nextflow using conda.
R is installed in conda.
(env_nf) [train@localhost ampliseq]$ which R
~/mambaforge/envs/env_nf/bin/R
I used this command:
next…
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Hi,
ran into the following error. I'm think there's unknown characters in the file, in this case blank spaces I'm guessing. Please advise on how to proceed.
```
fastqc /kyukon/data/gent/vo/000…
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Dear, @benjjneb !
A company performed a metabarcode sequencing (V3-V4 regions of the 16S rRNA gene) and sent to me the paired reads, already trimmed. The reads F and R came with the average lengths…
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### Description of the bug
Hi,
I ran the pipeline successfully, but in results folder I can not see any `deseq2` output:
```
results> ls -1
fastp
fastqc
genome
multiqc
pipeline_info
star_sal…
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### Description of the bug
When I ran a pipeline (v1.1.0), this error occurs at beginning of fastp transaction.
```
ERROR ~ Error executing process > 'NFCORE_DEMULTIPLEX:DEMULTIPLEX:FASTP (7)'
…
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**Snakemake version**
7.32.3
**Describe the bug**
snakemake hangs in --slurm mode when used with a profile and some quite standard options (that used to work before actually). This affects ALL jo…
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### Description of the bug
Pytest is throwing an error that it didn't do before in the Gitpod environment. No idea when the change happened though.
### Command used and terminal output
T…
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Thank you so much for developing such great software! Recently, I’ve been using >90 Gb of HiFi data to perform a genome survey on a rodent species, using k-mer 256 and k-mer 21, but the results seem t…