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Hi,
Following the new updated simpleSingleCell workflow , I use makeTechTrend() to fit mean-variance trend for my 10X data. However, after decomposeVar() from the new fit, many housekeeping genes, w…
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Hello,
I ran PureCN 1.10 with `--outvcf` parameter but it did not generate any VCF files. I want to know which somatic variants are clonal or subclonal. Here is the script that I use to construct t…
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Hi, I have 1562 cells in 8 time point (2h to 16h).
I am running URD, my root stage is h2 and final stage is h16 but I am being stopped at this stage. Could you please help me?
```
> axial.6so…
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Hello !
It has been a while since I used DADA2, and recently updated it directly from version 1.4.0 to 1.9.3. Following the changelog, I understood there were some differences and bug corrections w…
leasi updated
5 years ago
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Hello,
Back to #495 that has been closed,
I still have some concerns,
I have a set of nearly 50 GSEA signatures and I would like to score them in all my cells, similar to what produced by `Ce…
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could you please export the gene lists for the age-specific lineage signatures as described in issue #7?
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We are wondering if you can do a bit more analysis on the comparisons between Th1 and Th17. Would it be possible to overlay (i) the genes up-regualted in Th1 between young and old, and (ii) the genes …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/adricaba/mcsurvdata
Confirm the following by edit…
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Currently we basically create a signature file for each input and output file. Most of them are under `.sos/.runtime` but some global files have signatures under `~/.sos/.runtime`. The signatures cont…
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From Brian:
>I would like use to move away from the projections onto the tSNEs for looking at cluster gene expression. We will still have one color coded tSNE, but I think I would rather highlight…
jfear updated
6 years ago