farrellja URD issues - Githubissues

farrellja / URD

URD - Reconstruction of Branching Developmental Trajectories

GNU General Public License v3.0

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limit.single.sigmoid.slopes

#89 Ruismart opened 2 months ago
1
Set two roots?

#88 josephryan opened 3 months ago
0
what is tip.walk.files?

#87 wangzitiner opened 1 year ago
0
SupplementaryAnalysis.pdf --- Page 19 --- Batch correct data --- mnnCorrect

#86 zzy0630 opened 1 year ago
0
Installation: big trouble in many packages

#85 wangzitiner opened 1 year ago
0
Error in floodPseudotimeProcess

#84 mary77 opened 1 year ago
2
Error in visit.data[cells.in.tip, ] : incorrect number of dimensions

#83 zhang929821416 opened 1 year ago
0
where is walks.to.do object

#82 xujiahao778899 opened 1 year ago
0
determine.timing: Error in peak.rle[peak, "start"]:peak.rle[peak, "end"] : NA/NaN argument

#81 grimwoo opened 2 years ago
0
aucprTestByFactor

#80 MedCYLIU opened 2 years ago
0
Error in calcTsne and calcDM: length of 'dimnames' [1] not equal to array extent

#79 Sophia409 opened 2 years ago
2
Markers for Trajectory Branches.

#78 hzuzu opened 2 years ago
0
floodPseudotime

#77 allisoncheney opened 2 years ago
1
n_pcs is needed to be specified in calcDM

#76 mimi3421 opened 2 years ago
0
Supplementary Analysis Count and Meta data files out of date on Broad SC Portal

#75 gonzalezdavidmatthew opened 3 years ago
0
Update DESCRIPTION

#74 bschilder opened 3 years ago
0
Cholmod error

#73 rojinsafavi opened 3 years ago
1
error when installing destiny

#72 liuweihanty opened 3 years ago
1
macOS: Can't install because of package 'destiny'

#71 francoiskroll opened 3 years ago
1
gene cascade heatmap

#70 tracytktran opened 3 years ago
0
Fix broken link to Single Cell Portal

#69 eweitz opened 3 years ago
0
Link to processed URD object is out of date

#68 jlchang opened 3 years ago
0
seuratToURD2 (previous issue #29)

#67 Sa753 opened 3 years ago
3
Force directed layout fails to show even though it is loaded and calculated

#66 shiromchabra opened 3 years ago
1
Parallelization and scalibility

#65 macros29 opened 3 years ago
0
Pseudotime discontinuous at zero

#64 corwms opened 3 years ago
1
treeForceDirectedLayout error

#63 hogan-choi opened 3 years ago
2
plotTree order cells by expression?

#62 cnk113 opened 3 years ago
1
calcDM warning

#61 AndyR2 closed 3 years ago
1
processRandomWalksFromTips and tree question

#60 s849 opened 4 years ago
0
Update INSTALL.md

#59 maximilianh closed 4 years ago
1
the GENE name of GSE106474_UMICounts.txt.gz is human's

#58 Counts-Xin closed 3 years ago
1
'debug' to 'master' for version 1.1.1

#57 farrellja closed 4 years ago
0
memory blowout on createURD

#56 decarlin opened 4 years ago
2
Multiple root/end states

#55 s849 opened 4 years ago
2
Add missing close parenthesis

#54 kou opened 4 years ago
0
pseudotimeDetermineLogistic

#53 nnlrl opened 4 years ago
0
Weird behavior from buildTree

#52 ZhaoxiangSimonCai closed 4 years ago
2
how to extract the Embeddings information after treeForceDirectedLayout processing

#51 pangxueyu233 closed 4 years ago
3
get the URD object

#50 ChengTao2017 closed 4 years ago
0
Problems installing URD

#49 Thralni closed 4 years ago
5
URD -> destiny -> VIM -> car only available for R3.5

#48 maximilianh closed 4 years ago
10
reorder cluster of heatmap

#47 MichaelPeibo closed 4 years ago
1
Cell types annotation for the Zebrafish datasets

#46 yancychy closed 4 years ago
4
Not a complete segment tree plot

#45 MichaelPeibo closed 4 years ago
11
Failure to install on Windows R3.6.1

#44 Tongtong-Wang closed 4 years ago
2
Failure to install

#43 Tongtong-Wang closed 4 years ago
0
More than 70% of Cells Not Getting Walked

#42 stephenchea closed 4 years ago
1
Remove Batch Effects from Samples of the Same Stage

#41 stephenchea closed 4 years ago
1
Pull next 1.1 into master

#40 farrellja closed 4 years ago
0