issues
search
farrellja
/
URD
URD - Reconstruction of Branching Developmental Trajectories
GNU General Public License v3.0
115
stars
41
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Merge debug 1.0.3.9003 into master
#39
farrellja
closed
4 years ago
0
Error in combineTipVisitation
#38
Yichel518
closed
5 years ago
0
Error When Running pseudotimeWeightTransitionMatrix
#37
stephenchea
closed
4 years ago
1
Error in Define the tip cells
#36
Yichel518
closed
5 years ago
5
buildTree Error
#35
02infi
closed
4 years ago
5
Generate biased transition matrix
#34
Yichel518
closed
5 years ago
1
Where is meta.axial.txt in artical
#33
Yichel518
closed
5 years ago
3
Error in names(stats) in aucprTestAlongTree
#32
MichaelPeibo
closed
5 years ago
6
Debug to master version 1.0.3
#31
farrellja
closed
5 years ago
0
cells' pseudotime assigned as NA
#30
MichaelPeibo
closed
5 years ago
3
scRNA profiles from multiple time points; Seurat to URD; clustering in Seurat
#29
stephenchea
opened
5 years ago
4
Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 105
#28
ksr2018
closed
5 years ago
1
Error in simulateRandomWalksFromTips step
#27
ksr2018
closed
5 years ago
2
Error in embed in Buildtree
#26
zacharylau10
closed
5 years ago
0
Error from force-directed layout generation
#25
sobjb7osx2
closed
5 years ago
13
Calculating gene modules
#24
fereshtehizadi
closed
5 years ago
0
Using different set of genes in calcPCA
#23
fereshtehizadi
closed
5 years ago
1
Finding cluster specific marker genes
#22
beginner984
closed
5 years ago
2
Merge debug into master for v1.0.2
#21
farrellja
closed
5 years ago
0
Using URD with small a number of cells
#20
beginner984
closed
5 years ago
1
Plotting a long list of genes on URD cell
#19
fereshtehizadi
closed
5 years ago
0
Using clusters of cells at the earliest time point
#18
fereshtehizadi
closed
5 years ago
0
Plotting my markers genes in URD object
#17
fereshtehizadi
closed
5 years ago
1
Can't install URD due to TTR error on mac
#16
tsotnech
closed
5 years ago
2
Force-directed tree drawing error
#15
concatenize
closed
5 years ago
1
Finding the variable genes between cells
#14
fereshtehizadi
closed
5 years ago
0
Permanent error by graphClustering
#13
fereshtehizadi
closed
5 years ago
1
buildTree error: undefined columns selected
#12
concatenize
opened
5 years ago
9
Importing Seurat ro URD
#11
fereshtehizadi
closed
5 years ago
1
Possible extra system dependency - udunits
#10
snugghash
closed
5 years ago
3
Possibly constrained R version?
#9
snugghash
closed
5 years ago
1
aucprTestByFactor
#8
hgb1111
closed
5 years ago
4
Fix bug when only one start cell is given
#7
zouter
closed
5 years ago
1
floodBuildTM function
#6
diegomscoelho
closed
5 years ago
1
pseudotimeWeightTransitionMatrix & simulateRandomWalksFromTips
#5
lushjia
closed
6 years ago
1
object@group instead of object@group.ids?
#4
Kgies10
closed
6 years ago
2
cells were not visited by a branch that exists at their pseudotime and were not assigned.
#3
joshua-gould
closed
5 years ago
1
Supplementary Analysis
#2
Kgies10
closed
6 years ago
2
Cannot install on linux
#1
wulabupenn
closed
6 years ago
2
Previous