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Good day,
I cant load a `.crb`file using the shiny app. After launching `cerebroApp::launchCerebro(maxFileSize =100000)`, it does not load the file. The cerebro file was created successfully. Do no…
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Hi Uyen,
Would it be possible to implement an option for "whitelisting" important taxa that should not be removed? In particular, I am thinking about protecting outgroups from pruning when per-specie…
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Dear Michael
Greetings.
Thank you for developing this wonderful package. I have a query related to genome stats. How the quality of genome bins are assessed? In the datasets i used, assembly qu…
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# Bactopia v2 Overview
With tremendous effort by @mxrcon and @abhi18av, the [foundation for migrating Bactopia to DSL2 has been laid out](https://github.com/bactopia/bactopia/pull/228). This transiti…
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I have BUSCO Metazoa and BUSCO Mollusca gene sets for ~50 cephalopod species. The number of genes per species for most species is around 700 and 3500, respectively - but ranges from 550 - 950 and 2250…
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Add an optional Taxon.sequenceIndex field to support a taxonomic ordering of children with the same parent.
It should be integer values only using a natural ordering, i.e. the smaller ints come first…
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All the examples above run well with the version on your new branch. So I tried on 9-taxon network that had lead me to the 3-taxon example above. Unfortunately I hit the same bug again... and a new on…
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November 6, 6:02 PM
## Abt the code, some inconsistency okay
If differences does not lead to incorrect results, may be acceptable, eg some parameter settings
Num trees used may not be the same …
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hi, it's my first time to use ASTRID. I bazel build //src:ASTRID -c opt successful, but i cannot bazel build //src:ASTRID-phydstar -c opt.
Thanks for any help.
[Untitled Document 1.txt](http…
Gefsy updated
3 years ago
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Hi @shajoezhu and @jamdeg, I gave a time-consistent (ultrametric) network as input, but hybrid-lambda complains that it's not ultrametric, and the simulated gene trees are not ultrametric. So here is …