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Error when running ananse network (v0.3.0):
`ananse binding -A GS691_4888_PI3K_OATAC_m1_filtered_nodups.bam -H GS784_4888_PI3K_H3K27ac_m1_filtered_nodups.bam -g mm10 -o PI3K.4888 -r multi_ATAC_comp…
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Hi, I am trying to run chess sim command.
In 'pairs' option, I tried to input hiccups output which is composed of 6 columns (chr1, start1, end1, chr2, start2, end2).
However, an error occurred sayin…
ysora updated
3 years ago
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@Euphrasiologist @adtwyford - at the plant sample group meeting today, also talked about C value data. Sahr said she would be happy to share that data - but maybe it needs to be cleared with Ilia. @Lc…
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Hi,
I am trying to run Interproscan, but I am finding some errors that I do not know how to solve. Any help would be appreciated.
I am running InterProScan-5.48-83.0 in a Linux Debian system.
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## Bug report
Running the nf-core/sarek pipeline from a node with 128 Cores and 256 Threads, 1TB ram using Singularity and SGE.
Similar to https://github.com/nextflow-io/nextflow/issues/1871 and …
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Hi, I am trying use lisa to my own ATAC samples. Now I have a N*m matrix and a input gene list, which N represent N ATAC peak region and M reprsent M samples.
I am wordeing whether I can apply lisa …
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Hi,
I'm sorry because I think my question is very very naive...
I got an error while running velocyto:
logging.debug(f"Example of barcode: {valid_bcs_list[0]} and cell_id: {valid_cellid_list[0]…
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I notice that the iGUIDE alignment has a very strong enriched of reads at each chromosome's centromere. Is there a reason for this? How are theses regions filtered out and excluded from off-target eve…
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Hi MiGA team!
I installed MiGA via conda, and followed the installation instructions. Got it to work for taxonomy calling. However, when I go to use miga wf, for index (aai, ani), it gives me this …