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I have been trying to run Interproscan 5.22-61 in the bash terminal for a Bash on Windows installation, and I keep getting the following error:
Command: bin/gene3d/DomainFinder3 -l 5900 -e 0.001 -i…
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Hi,
I am testing a new installation of interproscan (v 6.23-62.0). I am using the provided test_protein.fasta file and using the following command:
$ ./interproscan.sh -dp -i test_proteins.fasta…
raj76 updated
7 years ago
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on HPC cluster, databases often have to be separated from the installation directory of a software. Is it possible to store the data directory of interproscan in a different location outside the insta…
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Is there any way to pass KEGG annotation to funannotate annotate, like it works for InterProScan?
Actually KEGG ontology is the part of EggNog 4.5, it it possible to add them in the next revisions of…
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Dear Jon,
I have launched funannotate predict with the following parameters, and it has failed:
```
funannotate predict -i 901.masurca.scf.fasta -o 901.fun_out --species "Linum usitatissimum" -…
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This currently requires the filenames centrifuge_hits.tsv and centrifuge_reports.tsv. Would be preferable to do something that allowed arbitrary file paths, as in most of the other parsers, for exampl…
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Dear Jon
I am stuck with InterProScan. It seems unable to reach the server...
I had the following message for hours...
```
[04:28:29 PM]: Now running InterProScan search remotely using EBI servers on…
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I remember that Phobius was working properly a few months earlier. However, Phobius now doesn't work as it should. When I just simply try to run funannotate annotate, I get the following error in the …
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We're trying to set up interproscan to run as a web service, under the www user, which has no home directory. Unfortunately the program throws and exception and exits immediately when it is not able t…
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Hi,
I am using Interproscan - which is very nice by the way - to analyze ~30,000 arabidopsis proteins.
This is an LSF cluster. Jobs were submitted to LSF and appeared to complete fine, calculations…