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- [x] Use conda for requirements.
- [x] Test with planemo.
- [x] Publish to testtoolshed.
- [x] Ask for installation on dev instance.
pkrog updated
4 years ago
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### Basic information
* My operating system and version: Windows 10
* My MZmine version: 3.9.0
### What happened
* able to upload .mzml data in to applications and saved the progress. when I…
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Problem:
Loading in entire libraries (>100.000) takes time for file types like mgf. Currently I often store large cleaned spectra files as pickled list of matchms objects, which is much faster. How…
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When running SpectraST using the OpenMS Thirdparty Unix binary, it works, however it does not correctly annotate RT metavalues.
In fact for my data it annotates the same value as m/z for retention …
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Hi
I'm having an error with PTMShepherd with reading my mzML files on linux.
```
PTMShepherd [Work dir: /data/MS_2024-10-01-001/finalDB_MBR_3ppm3minRT_10topRuns_0.5cor/out]
java -Xmx490G -Dlib…
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Dear DiaNN authors,
Thank you very much for developing such a nice tool.
I am trying to run DIA-NN from a linux server using your CLI. I noticed that there is no helping messages, i.e., `--help…
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[log_2024-07-01_16-12-19.zip](https://github.com/user-attachments/files/16054239/log_2024-07-01_16-12-19.zip)
Hi,
I processed three timsTOF .d files with FragPipe 22 using the LFQ-phospho w…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hi, when i run the TMT-Integrator to integrate results of TMT-11, i can not get result report and the error as follow:
**java -jar -Xmx16g /home/F/zjj/CPTAC_PAAD/MS/TMTIntegrator_v4.0.1.jar tmt-i_p…