-
## Description
I've been using scanpy for a while and installed squidpy in the same conda environment. When I try to import squidpy, it gives an error saying there is no module named anndata._io.sp…
-
Good afternoon. I'm attempting to rename a single file of the 000108 dandiset today with `dandi move` but I'm not seeing any change, despite the process indicating success.
The command I'm running …
-
We need a converter for data generated by the [OpenCell pipeline](https://github.com/czbiohub/dragonfly-automation) such that it can be easily viewed and processed by downstream analysis pipelines.
…
-
Ref https://ngff.openmicroscopy.org/0.4/#image-layout
> ├── .zgroup # Each image is a Zarr group, or a folder, of other groups and arrays.
> ├── .zattrs # Group…
-
Since the current data have only 1 `multiscales` resolution, generation of thumbnails in IDR takes a long time as the full-scale images must be retrieved to generate thumbnails.
The script at https…
-
Upon parsing of the raw images we are currently identifying all the plates which are available in a given input folder. In current examples there is only one plate, but in principle there could be mor…
-
With our new use of `NgffImageMeta`, the Omero channels window appears to have become required in 0.12.0, while it's an optional thing for a user to enter in the web interface.
I don't fully unders…
-
As per https://github.com/ome/ngff/pull/64, there should be a `tables` key in `.../tables/.zattrs`.
```
# The tables group is a container which holds one or multiple tables that are compatible wit…
-
* wsireg version: 0.3.8
* Python version: 3.10.12
* Operating System: Scientific Linux el7
### Description
I am trying to register these two images, following the tutorial.
![image](https://…
grst updated
11 months ago
-
I think we should tackle another round of refactoring the metadata handling & how things are passed between tasks. Specifically, do tasks always need to write metadata? And can tasks start without met…