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Hi, I want to use bslmm model to predict my phenotype data.
I used - bslmm 1 option with -maf 0 -miss 1 -hwe 0 -r2 1 SNP QC options, so that all of snps can be analyzed
![image](https://user-…
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Dear,
It was a great package! I just want to know how to export the particular distance data like this,
sm.pl.spatial_distance (adata, method='numeric',
distance_from='Macrophages',imageid=…
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See row 70 of the ontology table.
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Hi,
We are thinking about applying mashr for gwas studies. The gwas studies contain same samples of single phenotype at different time point, or multiple related phenotypes.
Because gwas contains…
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I am using the test data with the commands outlined in the manual and am getting an error when using the epistatic.correlation function. Any suggestions?
> library(WISH)
> library(data.table)
dat…
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Hey, not sure if you're aware but there's really a lot of garbage there, as OpenSNP is probably not checking what users are uploading.
Here's a normalized list of file types I've found in your db:
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Regarding variables from `participants.tsv` or within `phenotype/`:
1) Add as regressor(s) to existing contrasts
2) Correlate variable(s) with existing contrasts
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What would be the best way to incorporate environmental data? Is it possible to link phenoscape and other semantic phenotype representations to ENVO?