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Is is possible run cis mapping with categorical interaction terms? I am trying to consider cell type in addition to genotype. My understanding of the GTEx paper is that the interaction term was conti…
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Based on @harryhoch's mockups, I started the redesign. The first thing I did was to clean up the page and related code. I also rephrased the section titles as you can see from the second image. In sec…
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via @jxchong cc @arq5x
A user may find a variant that is not itself associated with disease, but is in a gene known to be associated with the disease. There is no way to store or query this info in g…
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Hello,
I've been trying to run scissor with a TCGA dataset and while the survival analyses work fine, when I try to use the binomial family to assess a phenotype it selects 0 cells. I tried it wit…
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As discussed on https://trello.com/c/s0HD7Vi6/173-tagexport-py
Requirement is to be able to see the genes found in metadata across screens.
- need to be able to filter according to gene symbol
- rest…
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**Transferred from:** [NIF-11599](https://support.crbs.ucsd.edu/browse/NIF-11599)
**Original Reporter:** Nicole Washington
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We need a section of GENO that records the properties of an "allele" on…
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See #56
Is it useful to be able to query for eg. NOT high temperature?
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**Description of issue:**
IMPC_VIA_002 data allows to have more than one “Measured value” (and therefore the corresponding “Associated phenotype”) based on the same data / counts. There is no need to …
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**WORKFLOW INPUT:**
See ICEES_FeatureVariables and ICEES_Identifiers [here](https://github.com/NCATS-Tangerine/icees-api/tree/master/docs) for diagnoses. Note that these docs are updated as new var…
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EPIC
Background - IMPC would like to be able to mine GWAS data for evidence of phenotypic effects on the genes they target, grouping the results with IMPC phenotype annotations with MP,
e.g.
…