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Hi, @wu-lab-egio
Very useful software, but this software is not generally friendly and convenient, here I encountered some errors
`/usr/bin/ld.gold: --push-state: unknown option
/usr/bin/ld.gol…
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Hi, thanks for your great work. After reviewing your codes to compute the correlation, I have some questions.
```
def get_across_x_correlation(
ad: ad.AnnData,
axis: Literal[0, 1] = 0,
…
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CheckM fails to parse numpy float64 binStats results and gave this error:
```bash
Unexpected error:
Traceback (most recent call last):
File "/home/matinnu/test/bgcflow/.snakemake/conda/9155cc…
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Hi :)
I had such problem while creating a new scheme on 200 ref sequences from NCBI. I have no idea how to solve it. I'll be grateful for help.
Kasia
CPU cores: 22
BLAST Score Ratio: 0.6
Tr…
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### System Info
python 3.10
transformer 4.43
### Who can help?
_No response_
### Information
- [ ] The official example scripts
- [ ] My own modified scripts
### Tasks
- [ ] An officially supp…
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Hi,
I have been running the `pypgx run-ngs-pipeline` in a loop for many genes, including NAT2. I have processed the same samples multiple times (for testing purposes) and I have not had a problem w…
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https://github.com/geneontology/go-ontology/issues/16048
I suggest to get rid of these if the "with" field can be applied.
Some refer to a single specific gene product (with field)
some are not…
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Hi, I'm running Breseq to compare two closely related lactobacillus strains and I am getting +10K> mutations.
During the run, I get an error saying that the strains seem much different (above 1% dif…
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We've noticed this the last few times we've committed the PomBase GAF to GO: the gene_association.pombase.inf.gaf file produced by the Jenkins job has far fewer inferred annotations than the equivalen…
mah11 updated
2 months ago
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Hi @SONGDONGYUAN1994 @qw130 , thanks for your contribution to scDesign3! I have an interesting question to discuss: Do you have any ideas for generating spatially invariant genes when simulating new s…