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**Are you using the latest release?**
Yes, I am using funannotate version v1.8.17, and the issue persists.
**Describe the bug**
While running the `funannotate predict` pipeline, I encountered…
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Meeting follows on from June 2021 meeting at #44.
**When**: Tue July 6th 2pm London (BST).
**Where**: https://ucl.zoom.us/j/91614633419
**Recording**: https://youtu.be/lAWCUQGDGtY
**Actions from…
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Hi!
I recently ran funannotate compare with 14 genomes and it generated ~3.1mil files (and then was killed because our group hit the 15 mil file limit for our cluster allocation).
I'd like to
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Right now I cut the CDR3 exactly in half. But here's a plot of the length of the untrimmed genes:
![image](https://user-images.githubusercontent.com/112708/52156652-5e187600-263e-11e9-9b5e-aabb1317…
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Hi John,
I've got some SingalP6 output I'd like to include in my annotate stage. I've tried the --signalp method but it threw an error. I'm using funannotate v1.8.7. I'll pop in the error then a he…
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## Task
Add an output file to accompany the node metadata created for each build that provides users with an easy way to identify what type each triple is.
### Design
The file should at a min…
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Hello,
I am running the following command
`` funannotate annotate --gff Slycopersicum_225_iTAGv2.3.gene_exons.gff3 --fasta Slycopersicum_225_iTAGv2.40.fa -s 'Solanum lycopersicum' -o Sly --cpu 12 …
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This SEP proposes a set of terminology and practices for representing genetic parts and functional devices at various stages of design, synthesis, and assembly. These practices are intended to represe…
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Hi @ppxasjsm from discussions with @maxkuhn it is also good to clarify
- why the R_mean value from X resampled calculated free energies is always lower than the R value of the original dataset
…
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Hi,
I want to do some end-to-end training using your sw_cuda modual. But it seems that I don't how it works. My code:
``` python
from deepblast.sw_cuda import SmithWatermanDecoder
device = torch…