matsengrp vampire issues

matsengrp / vampire

🧛 Deep generative models for TCR sequences 🧛

Apache License 2.0

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issues

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yml file out of date / tensorflow docker?

#124 chenling-immunai closed 2 years ago
1
reinitialize_weights not compatible with tensorflow2

#123 tdw1221 closed 4 years ago
1
How to track KL divergence and reconstruction loss separately during training?

#122 dandanpeng closed 4 years ago
2
Upgrade to TF 2.0

#121 matsen opened 4 years ago
0
117 overview

#120 matsen closed 4 years ago
0
118 test script

#119 matsen closed 4 years ago
0
test script that runs in the docker image

#118 matsen closed 4 years ago
0
add link to paper, overview, etc.

#117 matsen closed 4 years ago
0
115 update sumrep

#116 matsen closed 4 years ago
0
Update to sumrep master

#115 matsen closed 4 years ago
0
pip install fails due to missing _version_build.py

#114 dhmay closed 4 years ago
0
add the ability to further train a model

#113 matsen opened 5 years ago
0
97 clean models

#112 matsen closed 5 years ago
0
109 analysis move

#111 matsen closed 5 years ago
0
add a license!

#110 matsen closed 5 years ago
0
Move analysis to the analysis repo

#109 matsen closed 5 years ago
0
107 frequency prediction

#108 matsen closed 5 years ago
0
frequency prediction pipeline

#107 matsen closed 5 years ago
0
104 economize

#106 matsen closed 5 years ago
0
drop training "diagnostics"

#105 matsen opened 5 years ago
0
economize on space

#104 matsen closed 5 years ago
0
Exclude TCRBJ2-5, which Adaptive annotates badly

#103 matsen closed 5 years ago
0
Exclude TCRBJ2-5, which Adaptive annotates badly

#102 matsen closed 5 years ago
1
100 conda

#101 matsen closed 5 years ago
0
issues generated by conda updating

#100 matsen closed 5 years ago
0
Switch to tf.keras

#99 matsen closed 5 years ago
1
34 versioning

#98 matsen closed 5 years ago
0
clean up models

#97 matsen closed 5 years ago
0
95 attrition fail

#96 matsen closed 5 years ago
0
Fail when too much filtering attrition

#95 matsen closed 5 years ago
0
splitting and running via JSON improvements

#94 matsen closed 5 years ago
0
Ingest naive BCR data

#93 matsen opened 5 years ago
1
78 simplify

#92 matsen closed 5 years ago
0
89 training divergence

#91 matsen closed 5 years ago
0
86 wildcard

#90 matsen closed 5 years ago
0
add divergence from training data to divergence scatterplots

#89 matsen closed 5 years ago
0
Uneven split

#88 matsen opened 5 years ago
12
81 ppost vs pvae

#87 matsen closed 5 years ago
0
PVAE with wildcards

#86 matsen closed 5 years ago
1
82 numpy string bug

#84 matsen closed 5 years ago
0
80 olga low pgen

#83 matsen closed 5 years ago
0
apply_along_axis is trimming strings to be the same length

#82 matsen closed 5 years ago
1
Rejigger things so that we can get Ppost and Pvae in the same plot

#81 matsen closed 5 years ago
0
OLGA gives surprisingly low probabilities to TRBJ1-6 and TRBJ2-7

#80 matsen closed 5 years ago
2
76 restarter

#79 matsen closed 5 years ago
0
Simplify running

#78 matsen closed 5 years ago
2
2 dropping VJ-CDR3 deduplicating

#77 matsen closed 5 years ago
0
restarter script

#76 matsen closed 5 years ago
1
74 repertoire split tooling

#75 matsen closed 5 years ago
0
Better tooling for developing merged training sets and specifying testing sets.

#74 matsen closed 5 years ago
1