-
Hello,
I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.:
```
File "", line 421, in combined_kernel_analysis
File …
-
It a wonderful computational tool!! When I test the PBMC pair dataset(https://uniport.readthedocs.io/en/latest/examples/PBMC/pbmc_integration.html) with harmony, I can't reproduce result displayed in…
-
I encountered an issue while converting TCR data from a Dandelion object to a Scirpy object for further analysis. Despite successfully performing all analyses with Dandelion, I received an error about…
-
After clustering cells with a restricted gene set, I would like to see the contribution of "specified genes" in subgrouping the cells. "sc.tl.rank_genes_groups" uses all the genes in the background fo…
-
- [ ] Build recipes via commit, manual, or GitHub deployment, and add Singularity images to some registry
- [ ] Test package on Debian11 - add CI/tests (integration/regression)!
- [ ] Currently…
-
Hi Developers
I have few queries!!
First, I am trying to use Margaret for Trajectory analysis. I have Normalized and Scaled counts obtained from Seurat for single cells. For our data, we know from…
-
Hi, thank you again for the previous explanation and this great work.
I have been through your paper, and I am interested in implementing the model on BBBC021 dataset.
Would it be possible to shar…
-
I keep getting this error and i ' m not sure what is the problem . Appriciated your helps .
Package was installed.
`---------------------------------------------------------------------------
…
-
Current behavior:
```python
import scanpy as sc
import numpy as np
import diffxpy.api as de
adata = sc.AnnData(np.random.normal(size=(100,10)))
de.test.rank_sum(adata, grouping=np.tile('a', …
-
Trying to cherry-pick a squash-merge results in errors like:
```
ct 29 18:13:42 meeseeksbot app/web.1: ----------------------------------------
Oct 29 18:13:42 meeseeksbot app/web.1: == Cleani…